Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   BV315_RS05665 Genome accession   NZ_LT615377
Coordinates   1063678..1064307 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate 106     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1058678..1069307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV315_RS05640 ycbZ 1059079..1060839 (-) 1761 WP_000156518.1 Lon protease family protein -
  BV315_RS05645 matP 1061025..1061477 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  BV315_RS05650 ompA 1061553..1062593 (-) 1041 WP_000750416.1 porin OmpA -
  BV315_RS05660 sulA 1062950..1063459 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  BV315_RS05665 sxy/tfoX 1063678..1064307 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  BV315_RS05670 yccS 1064270..1066432 (-) 2163 WP_000875061.1 YccS family putative transporter -
  BV315_RS05675 yccF 1066442..1066888 (-) 447 WP_001261235.1 YccF domain-containing protein -
  BV315_RS05680 helD 1067011..1069065 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1145366 BV315_RS05665 WP_000839153.1 1063678..1064307(+) (sxy/tfoX) [Escherichia coli isolate 106]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1145366 BV315_RS05665 WP_000839153.1 1063678..1064307(+) (sxy/tfoX) [Escherichia coli isolate 106]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment