Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | DXE33_RS00975 | Genome accession | NZ_LT615228 |
| Coordinates | 177861..179225 (+) | Length | 454 a.a. |
| NCBI ID | WP_114638251.1 | Uniprot ID | - |
| Organism | Polynucleobacter necessarius isolate PPGSP1 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 172861..184225
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DXE33_RS00955 | - | 174663..175034 (+) | 372 | WP_114638249.1 | glycine zipper family protein | - |
| DXE33_RS00965 | - | 175482..177323 (+) | 1842 | WP_114639677.1 | potassium transporter Kup | - |
| DXE33_RS00970 | - | 177371..177829 (+) | 459 | WP_231970278.1 | hypothetical protein | - |
| DXE33_RS00975 | radA | 177861..179225 (+) | 1365 | WP_114638251.1 | DNA repair protein RadA | Machinery gene |
| DXE33_RS00980 | prmB | 179231..180127 (-) | 897 | WP_114638252.1 | 50S ribosomal protein L3 N(5)-glutamine methyltransferase | - |
| DXE33_RS00985 | dapE | 180169..181320 (-) | 1152 | WP_114638253.1 | succinyl-diaminopimelate desuccinylase | - |
| DXE33_RS00990 | dapD | 181336..182163 (-) | 828 | WP_114638254.1 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | - |
Sequence
Protein
Download Length: 454 a.a. Molecular weight: 48165.93 Da Isoelectric Point: 7.3470
>NTDB_id=1145331 DXE33_RS00975 WP_114638251.1 177861..179225(+) (radA) [Polynucleobacter necessarius isolate PPGSP1]
MAKVKTVYICQSCGGTSAKWQGQCPSCQAWNTMEEGLPETISNSRFQGLAQSLPRQKLSAISAEDLPRFSTGVEEFDRVL
GGGLVPGGVVLLGGDPGIGKSTLLLQALAEMSTAGMNVLYSSGEESAAQIALRAKRIALDAPQLEVLAEIQLEKLISIMD
TVKPQVLVVDSIQTLYSEVLSSAPGSVAQVRECAAQLTRAAKASGICVLMVGHVTKDGHLAGPRVLEHIVDTVLYFEGDT
HSSFRLVRSIKNRFGAVNELGVFAMTEKGLRGVTNPSAIFLSQHEQMVPGACVLVTQEGSRPLLVEIQALVDTAHVPNPR
RLAVGLEQARLAMLLAVLHRHAGVACFDQDVFLNAVGGVKISEPAADLAVLLAIQSSIRNRALPKELIVFGEVGLAGEIR
PCPRGQERLKEAAKLGFTVAIIPKANAPKTKIPGLKVISVERIDQAIAAAAELS
MAKVKTVYICQSCGGTSAKWQGQCPSCQAWNTMEEGLPETISNSRFQGLAQSLPRQKLSAISAEDLPRFSTGVEEFDRVL
GGGLVPGGVVLLGGDPGIGKSTLLLQALAEMSTAGMNVLYSSGEESAAQIALRAKRIALDAPQLEVLAEIQLEKLISIMD
TVKPQVLVVDSIQTLYSEVLSSAPGSVAQVRECAAQLTRAAKASGICVLMVGHVTKDGHLAGPRVLEHIVDTVLYFEGDT
HSSFRLVRSIKNRFGAVNELGVFAMTEKGLRGVTNPSAIFLSQHEQMVPGACVLVTQEGSRPLLVEIQALVDTAHVPNPR
RLAVGLEQARLAMLLAVLHRHAGVACFDQDVFLNAVGGVKISEPAADLAVLLAIQSSIRNRALPKELIVFGEVGLAGEIR
PCPRGQERLKEAAKLGFTVAIIPKANAPKTKIPGLKVISVERIDQAIAAAAELS
Nucleotide
Download Length: 1365 bp
>NTDB_id=1145331 DXE33_RS00975 WP_114638251.1 177861..179225(+) (radA) [Polynucleobacter necessarius isolate PPGSP1]
TTGGCTAAAGTTAAAACGGTTTATATCTGCCAGTCCTGTGGCGGAACATCTGCTAAGTGGCAAGGGCAGTGCCCATCTTG
TCAAGCCTGGAATACGATGGAAGAGGGTCTTCCAGAGACTATCTCCAACTCTCGTTTTCAGGGTCTGGCGCAATCTTTAC
CAAGACAAAAATTATCTGCGATTAGCGCCGAAGATTTGCCGCGCTTTAGTACGGGTGTTGAAGAGTTTGATCGCGTATTG
GGTGGCGGTCTTGTTCCTGGTGGAGTAGTTTTGCTTGGTGGCGATCCGGGTATTGGTAAATCTACATTACTTCTACAAGC
GCTTGCAGAGATGAGTACTGCCGGCATGAATGTTCTTTATAGCAGCGGCGAAGAATCTGCGGCACAAATTGCTCTGCGTG
CTAAACGTATTGCGCTAGATGCGCCTCAGCTTGAAGTTCTAGCTGAAATCCAGCTGGAAAAACTGATTTCGATAATGGAT
ACCGTTAAGCCTCAGGTTCTAGTAGTTGATTCGATTCAAACCTTGTACTCTGAGGTGTTAAGTTCTGCACCCGGATCAGT
TGCCCAGGTGCGAGAGTGTGCGGCGCAGTTAACCCGTGCTGCCAAAGCCAGCGGTATTTGCGTATTGATGGTGGGTCATG
TGACCAAAGATGGTCATTTGGCTGGGCCGCGCGTTTTAGAACATATTGTTGATACGGTTCTCTATTTTGAGGGGGATACC
CACTCCTCTTTCCGTTTGGTGCGTTCCATTAAGAATCGTTTTGGAGCTGTCAATGAATTGGGCGTATTTGCGATGACCGA
AAAAGGTCTTCGAGGAGTCACCAATCCATCGGCTATCTTTTTATCTCAGCACGAGCAGATGGTTCCGGGCGCGTGCGTGC
TCGTGACTCAAGAGGGAAGCAGGCCATTATTGGTTGAGATTCAGGCTCTGGTGGATACTGCGCATGTTCCCAATCCACGG
CGCCTCGCTGTTGGCTTAGAGCAGGCTCGCTTAGCAATGCTTTTAGCGGTTCTACACCGCCATGCTGGAGTCGCTTGTTT
TGATCAAGATGTGTTTTTAAATGCGGTTGGTGGCGTCAAGATCTCCGAGCCAGCCGCTGACCTTGCCGTACTATTAGCGA
TTCAGTCATCGATTCGTAATCGTGCATTACCAAAAGAATTGATTGTGTTTGGTGAGGTTGGCTTAGCTGGTGAGATTCGT
CCATGCCCAAGAGGCCAGGAGCGCTTAAAGGAGGCTGCCAAGTTGGGATTTACTGTAGCTATTATTCCAAAAGCCAATGC
GCCTAAGACAAAAATCCCAGGACTCAAAGTCATCTCCGTTGAGCGCATCGATCAAGCAATCGCTGCAGCGGCAGAGTTGA
GCTAA
TTGGCTAAAGTTAAAACGGTTTATATCTGCCAGTCCTGTGGCGGAACATCTGCTAAGTGGCAAGGGCAGTGCCCATCTTG
TCAAGCCTGGAATACGATGGAAGAGGGTCTTCCAGAGACTATCTCCAACTCTCGTTTTCAGGGTCTGGCGCAATCTTTAC
CAAGACAAAAATTATCTGCGATTAGCGCCGAAGATTTGCCGCGCTTTAGTACGGGTGTTGAAGAGTTTGATCGCGTATTG
GGTGGCGGTCTTGTTCCTGGTGGAGTAGTTTTGCTTGGTGGCGATCCGGGTATTGGTAAATCTACATTACTTCTACAAGC
GCTTGCAGAGATGAGTACTGCCGGCATGAATGTTCTTTATAGCAGCGGCGAAGAATCTGCGGCACAAATTGCTCTGCGTG
CTAAACGTATTGCGCTAGATGCGCCTCAGCTTGAAGTTCTAGCTGAAATCCAGCTGGAAAAACTGATTTCGATAATGGAT
ACCGTTAAGCCTCAGGTTCTAGTAGTTGATTCGATTCAAACCTTGTACTCTGAGGTGTTAAGTTCTGCACCCGGATCAGT
TGCCCAGGTGCGAGAGTGTGCGGCGCAGTTAACCCGTGCTGCCAAAGCCAGCGGTATTTGCGTATTGATGGTGGGTCATG
TGACCAAAGATGGTCATTTGGCTGGGCCGCGCGTTTTAGAACATATTGTTGATACGGTTCTCTATTTTGAGGGGGATACC
CACTCCTCTTTCCGTTTGGTGCGTTCCATTAAGAATCGTTTTGGAGCTGTCAATGAATTGGGCGTATTTGCGATGACCGA
AAAAGGTCTTCGAGGAGTCACCAATCCATCGGCTATCTTTTTATCTCAGCACGAGCAGATGGTTCCGGGCGCGTGCGTGC
TCGTGACTCAAGAGGGAAGCAGGCCATTATTGGTTGAGATTCAGGCTCTGGTGGATACTGCGCATGTTCCCAATCCACGG
CGCCTCGCTGTTGGCTTAGAGCAGGCTCGCTTAGCAATGCTTTTAGCGGTTCTACACCGCCATGCTGGAGTCGCTTGTTT
TGATCAAGATGTGTTTTTAAATGCGGTTGGTGGCGTCAAGATCTCCGAGCCAGCCGCTGACCTTGCCGTACTATTAGCGA
TTCAGTCATCGATTCGTAATCGTGCATTACCAAAAGAATTGATTGTGTTTGGTGAGGTTGGCTTAGCTGGTGAGATTCGT
CCATGCCCAAGAGGCCAGGAGCGCTTAAAGGAGGCTGCCAAGTTGGGATTTACTGTAGCTATTATTCCAAAAGCCAATGC
GCCTAAGACAAAAATCCCAGGACTCAAAGTCATCTCCGTTGAGCGCATCGATCAAGCAATCGCTGCAGCGGCAGAGTTGA
GCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Bacillus subtilis subsp. subtilis str. 168 |
49.558 |
99.559 |
0.493 |
| radA | Streptococcus pneumoniae Rx1 |
45.556 |
99.119 |
0.452 |
| radA | Streptococcus pneumoniae D39 |
45.556 |
99.119 |
0.452 |
| radA | Streptococcus pneumoniae R6 |
45.556 |
99.119 |
0.452 |
| radA | Streptococcus pneumoniae TIGR4 |
45.556 |
99.119 |
0.452 |
| radA | Streptococcus mitis NCTC 12261 |
45.556 |
99.119 |
0.452 |
| radA | Streptococcus mitis SK321 |
44.835 |
100 |
0.449 |