Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PHAGEPCYII10_RS10310 Genome accession   NZ_LT608330
Coordinates   2228568..2229203 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa isolate PA14Or_reads     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2223568..2234203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PHAGEPCYII10_RS10295 - 2224274..2225518 (+) 1245 WP_003105198.1 lipoprotein-releasing ABC transporter permease subunit -
  PHAGEPCYII10_RS10300 (PA14OR_2060) - 2225606..2226139 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  PHAGEPCYII10_RS10305 (PA14OR_2061) comA 2226270..2228495 (+) 2226 WP_003138588.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PHAGEPCYII10_RS10310 (PA14OR_2062) exbB 2228568..2229203 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PHAGEPCYII10_RS10315 - 2229200..2229640 (+) 441 WP_003091161.1 ExbD/TolR family protein -
  PHAGEPCYII10_RS10320 lpxK 2229640..2230638 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  PHAGEPCYII10_RS10325 (PA14OR_2065) - 2230676..2230861 (+) 186 WP_003091157.1 Trm112 family protein -
  PHAGEPCYII10_RS10330 kdsB 2230861..2231625 (+) 765 WP_003130694.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PHAGEPCYII10_RS10335 - 2231625..2232089 (+) 465 WP_003138590.1 low molecular weight protein-tyrosine-phosphatase -
  PHAGEPCYII10_RS10340 murB 2232086..2233105 (+) 1020 WP_003119807.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=1145253 PHAGEPCYII10_RS10310 WP_003091163.1 2228568..2229203(+) (exbB) [Pseudomonas aeruginosa isolate PA14Or_reads]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1145253 PHAGEPCYII10_RS10310 WP_003091163.1 2228568..2229203(+) (exbB) [Pseudomonas aeruginosa isolate PA14Or_reads]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGCACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81

Multiple sequence alignment