Detailed information NTG1145221

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: DXE37_RS00950
• Genome accession: NZ_LT606951
• Coordinates: 167998..168888 (-)
• Length: 296 a.a.
• NCBI ID: WP_114636270.1
• Uniprot ID: -
• Organism: Polynucleobacter necessarius isolate PPGSP6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 162998..173888

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DXE37_RS00925	-	163700..164356 (+)	657	WP_114636266.1	hypothetical protein	-
DXE37_RS00930	-	164356..165459 (+)	1104	WP_114636267.1	COX15/CtaA family protein	-
DXE37_RS00935	cyoE	165477..166370 (+)	894	WP_114637494.1	heme o synthase	-
DXE37_RS00940	-	166378..166962 (+)	585	WP_114636268.1	SCO family protein	-
DXE37_RS00945	rpoH	166981..167904 (-)	924	WP_114636269.1	RNA polymerase sigma factor RpoH	-
DXE37_RS00950	pilA	167998..168888 (-)	891	WP_114636270.1	signal recognition particle-docking protein FtsY	Machinery gene
DXE37_RS11955	-	169075..169719 (+)	645	WP_231970883.1	M16 family metallopeptidase	-
DXE37_RS11960	-	169751..169999 (+)	249	WP_231970884.1	hypothetical protein	-
DXE37_RS11965	-	170087..170314 (+)	228	WP_231970885.1	hypothetical protein	-
DXE37_RS13215	-	170325..171065 (+)	741	WP_269460251.1	M16 family metallopeptidase	-
DXE37_RS13220	-	171109..171654 (+)	546	WP_269460252.1	M16 family metallopeptidase	-
DXE37_RS00965	rsmD	171659..172216 (+)	558	WP_231970886.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
DXE37_RS00970	coaD	172300..172797 (+)	498	WP_114636271.1	pantetheine-phosphate adenylyltransferase	-
DXE37_RS00975	-	172814..173080 (+)	267	WP_114636272.1	YfhL family 4Fe-4S dicluster ferredoxin	-
DXE37_RS00980	pth	173111..173701 (-)	591	WP_114636273.1	aminoacyl-tRNA hydrolase	-

Sequence

Protein

• Length: 296 a.a.
• Molecular weight: 31306.84 Da
• Isoelectric Point: 7.1078

>NTDB_id=1145221 DXE37_RS00950 WP_114636270.1 167998..168888(-) (pilA) [Polynucleobacter necessarius isolate PPGSP6]
MFGLRKTLGSLFKSSKVDESWFDTLEDSLIQSDVGLPTTEQLISKLRKAAKSEKASSPEELQALLIQEVSSLLSAIEPLP
NPLFTSQKANAPEVWLVVGVNGAGKTTTIGKLCRLFQSQGKSVLLAAGDTFRAAARNQLQEWGGRNQVDVITQEGGDAAA
VAHDAIHAAISRKCDILIIDTAGRLATQDHLMEELKKVKRVIGKALPGAPHHTLLILDGNTGQNGLSQVRAFHAALGLTG
IIVTKLDGTAKGGVICALAHTLQDGPKPSVLALGKGEGIEDLASFTAGQYSSELFN

Nucleotide

• Length: 891 bp

>NTDB_id=1145221 DXE37_RS00950 WP_114636270.1 167998..168888(-) (pilA) [Polynucleobacter necessarius isolate PPGSP6]
ATGTTTGGCTTACGTAAAACCCTCGGATCCCTTTTTAAATCAAGTAAAGTTGATGAATCTTGGTTTGATACTTTAGAAGA
CTCACTCATTCAAAGTGATGTGGGTCTACCTACGACCGAACAACTGATCAGCAAACTACGTAAAGCTGCAAAATCAGAGA
AAGCCTCAAGCCCAGAGGAGTTGCAAGCACTCCTCATCCAAGAGGTTAGCTCATTACTAAGTGCAATCGAGCCTTTGCCA
AATCCACTCTTTACGAGTCAAAAAGCGAATGCTCCAGAAGTATGGTTAGTTGTAGGAGTAAATGGCGCTGGAAAGACCAC
CACCATTGGCAAACTTTGTAGACTGTTTCAATCTCAAGGTAAATCCGTCCTATTGGCTGCTGGGGACACCTTCAGAGCAG
CCGCTCGCAATCAACTACAAGAGTGGGGTGGACGCAACCAAGTAGATGTTATTACTCAAGAAGGTGGCGATGCTGCCGCT
GTTGCACACGATGCCATTCACGCTGCTATTTCACGCAAATGCGACATTCTTATCATTGATACCGCCGGACGGCTTGCTAC
TCAAGACCACTTGATGGAAGAGCTAAAAAAAGTAAAACGGGTCATCGGCAAGGCCCTTCCTGGGGCTCCTCACCATACAC
TGCTCATCTTGGATGGCAACACTGGCCAGAATGGTCTTAGCCAAGTCAGGGCTTTTCATGCGGCCTTGGGACTTACTGGA
ATTATTGTGACGAAGCTTGATGGCACTGCCAAAGGTGGGGTAATCTGTGCGTTGGCCCATACCCTACAAGATGGACCAAA
ACCTAGTGTTTTAGCTCTTGGCAAAGGCGAAGGAATTGAAGATTTAGCCTCCTTTACAGCAGGGCAATATTCTTCAGAAT
TATTCAATTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (4-68)

• SRP54-type protein, GTPase domain (SRP54) (92-295)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	51.877	98.986	0.514