Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   BQ1619_RS07635 Genome accession   NZ_LT606950
Coordinates   1379658..1380548 (+) Length   296 a.a.
NCBI ID   WP_114663238.1    Uniprot ID   -
Organism   Polynucleobacter necessarius isolate PPGSP4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1374658..1385548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BQ1619_RS07605 pth 1374869..1375459 (+) 591 WP_114663226.1 aminoacyl-tRNA hydrolase -
  BQ1619_RS07610 - 1375456..1375719 (-) 264 WP_114663228.1 YfhL family 4Fe-4S dicluster ferredoxin -
  BQ1619_RS07615 coaD 1375755..1376249 (-) 495 WP_114663230.1 pantetheine-phosphate adenylyltransferase -
  BQ1619_RS07620 - 1376286..1376816 (-) 531 WP_231968592.1 RsmD family RNA methyltransferase -
  BQ1619_RS07625 - 1376893..1378209 (-) 1317 WP_231968593.1 M16 family metallopeptidase -
  BQ1619_RS07630 - 1378227..1379594 (-) 1368 WP_114663236.1 M16 family metallopeptidase -
  BQ1619_RS07635 pilA 1379658..1380548 (+) 891 WP_114663238.1 signal recognition particle-docking protein FtsY Machinery gene
  BQ1619_RS07640 rpoH 1380644..1381573 (+) 930 WP_114663239.1 RNA polymerase sigma factor RpoH -
  BQ1619_RS07645 - 1381533..1382165 (-) 633 WP_114663240.1 SCO family protein -
  BQ1619_RS07650 cyoE 1382167..1383060 (-) 894 WP_114663241.1 heme o synthase -
  BQ1619_RS07655 - 1383057..1384160 (-) 1104 WP_114663242.1 COX15/CtaA family protein -
  BQ1619_RS07660 - 1384160..1384819 (-) 660 WP_114663243.1 hypothetical protein -

Sequence

Protein


Download         Length: 296 a.a.        Molecular weight: 31276.12 Da        Isoelectric Point: 9.9344

>NTDB_id=1145217 BQ1619_RS07635 WP_114663238.1 1379658..1380548(+) (pilA) [Polynucleobacter necessarius isolate PPGSP4]
MFGLRKTLGSLFKSSKTDEAWFDSLEKSLIQSDVGLPTTEQLISKLRKAAKTEKASTPEGLQALLIQEVGSLLKVLEPTP
NPLFIRLKDSLPEVWLVVGVNGAGKTTTIGKLCRLFQAQGKSVLLAAGDTFRAAARNQLQEWGGRNRVDVITQGGGDAAA
VAHDAIHSAISRKTDILIIDTAGRLATQGHLMEELKKVKRVIGRALPGAPHHTLLVLDGNTGQNGLSQVKAFHTALGLTG
IIVTKLDGTAKGGVICALAHTLQDGPKPAVLALGKGEGIDDLAPFTAGQYSAELFN

Nucleotide


Download         Length: 891 bp        

>NTDB_id=1145217 BQ1619_RS07635 WP_114663238.1 1379658..1380548(+) (pilA) [Polynucleobacter necessarius isolate PPGSP4]
ATGTTTGGATTACGTAAAACCCTCGGCTCTCTATTCAAATCCAGCAAGACGGATGAAGCTTGGTTTGATTCTTTAGAGAA
ATCGCTGATTCAAAGCGACGTTGGATTGCCCACGACAGAGCAATTAATTAGCAAATTGCGAAAAGCAGCAAAGACTGAAA
AAGCCTCGACGCCAGAAGGGTTGCAAGCTTTGCTCATACAAGAGGTCGGCTCTTTATTGAAAGTTCTCGAGCCGACTCCT
AACCCCTTATTTATAAGGCTCAAGGACAGCCTCCCAGAGGTTTGGCTGGTCGTTGGCGTGAATGGCGCAGGTAAAACAAC
AACGATTGGCAAGCTTTGCCGACTGTTTCAAGCTCAAGGCAAATCAGTACTGCTCGCAGCCGGCGATACATTCAGAGCAG
CAGCTCGCAATCAGCTACAAGAGTGGGGCGGACGCAATCGGGTAGATGTTATTACCCAAGGGGGTGGTGATGCAGCGGCT
GTTGCGCACGATGCTATTCATTCAGCTATTTCTCGCAAGACAGATATTTTGATTATTGACACTGCTGGACGGCTTGCCAC
CCAGGGCCACCTAATGGAAGAACTAAAAAAAGTGAAGCGAGTGATTGGTAGGGCGCTTCCTGGAGCTCCTCACCATACCC
TCTTGGTCCTCGATGGCAACACCGGCCAAAATGGCTTAAGTCAGGTAAAGGCTTTTCATACAGCCCTAGGTCTTACGGGA
ATCATCGTTACCAAGCTCGATGGCACCGCCAAAGGCGGCGTTATCTGTGCCTTAGCTCATACCCTTCAAGATGGGCCAAA
ACCGGCTGTACTGGCTTTAGGCAAAGGTGAAGGGATTGATGATTTAGCCCCCTTTACGGCGGGACAATATTCAGCCGAAT
TATTCAATTGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(4-68)

SRP54-type protein, GTPase domain (SRP54)

(92-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

51.877

98.986

0.514

Multiple sequence alignment