Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BQ1619_RS05685 Genome accession   NZ_LT606950
Coordinates   1013967..1015331 (-) Length   454 a.a.
NCBI ID   WP_114662749.1    Uniprot ID   -
Organism   Polynucleobacter necessarius isolate PPGSP4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1008967..1020331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BQ1619_RS05670 dapD 1011011..1011838 (+) 828 WP_114662743.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase -
  BQ1619_RS05675 dapE 1011845..1012996 (+) 1152 WP_114662745.1 succinyl-diaminopimelate desuccinylase -
  BQ1619_RS05680 prmB 1013052..1013948 (+) 897 WP_114662747.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  BQ1619_RS05685 radA 1013967..1015331 (-) 1365 WP_114662749.1 DNA repair protein RadA Machinery gene
  BQ1619_RS05690 - 1015364..1015825 (-) 462 WP_231968547.1 hypothetical protein -
  BQ1619_RS05695 - 1015870..1017715 (-) 1846 Protein_1198 potassium transporter Kup -
  BQ1619_RS05705 - 1018147..1019553 (-) 1407 WP_114662753.1 DEAD/DEAH box helicase -
  BQ1619_RS05710 - 1019560..1019964 (-) 405 WP_174222117.1 GlcG/HbpS family heme-binding protein -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48096.93 Da        Isoelectric Point: 7.8423

>NTDB_id=1145212 BQ1619_RS05685 WP_114662749.1 1013967..1015331(-) (radA) [Polynucleobacter necessarius isolate PPGSP4]
MAKVKTVYICQSCGGTSAKWQGQCPSCQAWNTMEEGLPETTSNSRFQGLAQSLSRQKLSAITAEDLPRFSAGVEEFDRVL
GGGLVPGGVVLLGGDPGIGKSTLLLQALAEMSAAGMNVLYSSGEESAAQIALRAKRIALNAPQLEVLAEIQLEKLISIMD
TVKPQVLVVDSIQTLYSEVLSSAPGSVAQVRECAAQLTRAAKASGICVLMVGHVTKDGHLAGPRVLEHIVDTVLYFEGDT
HSSFRLIRSIKNRFGAVNELGVFAMTEKGLRGVTNPSAIFLSQHEQMVPGACVLVTQEGSRPLLVEIQALVDTAHVPNPR
RLAVGLEQARLAMLLAVLHRHAGVACFDQDVFLNAVGGVKISEPAADLAVLLAIQSSIRNRALPKGLIVFGEVGLAGEIR
PCPRGQERLKEAAKLGFTVAVIPKANMPKTKIAGLKVIPVERIDQAIAVAAELS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=1145212 BQ1619_RS05685 WP_114662749.1 1013967..1015331(-) (radA) [Polynucleobacter necessarius isolate PPGSP4]
TTGGCCAAAGTCAAAACGGTTTATATCTGCCAATCCTGTGGTGGCACCTCTGCTAAATGGCAGGGACAATGTCCTTCCTG
CCAGGCGTGGAACACCATGGAAGAAGGTTTGCCAGAAACCACTTCGAATTCGCGTTTTCAGGGTTTGGCGCAATCCTTAT
CAAGGCAAAAGCTCTCAGCAATTACCGCAGAAGACTTGCCCCGCTTTAGTGCAGGTGTAGAAGAATTTGATCGCGTATTG
GGTGGCGGTTTAGTTCCTGGTGGCGTGGTGTTGTTAGGCGGGGACCCAGGAATCGGTAAGTCAACATTACTATTGCAAGC
CCTTGCAGAAATGAGTGCTGCCGGCATGAATGTGCTTTACAGCAGCGGTGAAGAGTCTGCTGCGCAAATTGCGTTGCGTG
CCAAGCGGATTGCGCTAAATGCTCCACAGCTTGAGGTCTTAGCAGAGATTCAGTTGGAGAAATTAATCTCCATCATGGAT
ACGGTTAAGCCCCAGGTATTGGTAGTGGATTCGATACAGACTTTATATTCTGAGGTGCTCAGTTCCGCTCCAGGATCAGT
AGCACAAGTGCGCGAATGTGCTGCGCAACTGACGAGAGCCGCAAAGGCGAGTGGGATCTGTGTATTGATGGTAGGTCATG
TCACGAAAGATGGGCATTTAGCAGGACCACGCGTACTGGAACATATTGTGGACACCGTGTTGTACTTTGAGGGCGATACA
CATTCATCATTTCGCTTGATTCGCTCTATTAAAAATCGTTTCGGCGCGGTCAATGAGCTTGGCGTATTCGCGATGACTGA
AAAAGGATTGCGTGGCGTCACCAATCCTTCGGCAATTTTCTTATCGCAGCATGAGCAAATGGTGCCAGGTGCTTGTGTGC
TGGTCACGCAAGAGGGTAGCAGGCCGCTGTTGGTAGAAATTCAAGCGCTGGTGGATACTGCGCATGTGCCAAATCCGCGT
CGCCTTGCGGTAGGTCTTGAGCAGGCTCGTTTAGCAATGCTTTTGGCGGTATTGCATCGCCATGCCGGAGTAGCATGCTT
TGATCAAGATGTATTCTTGAATGCCGTTGGTGGTGTCAAAATTTCTGAGCCTGCAGCTGACCTGGCGGTATTATTGGCAA
TTCAATCCTCGATTCGCAATCGTGCCCTCCCAAAAGGGTTGATTGTTTTTGGTGAGGTTGGCTTGGCTGGGGAAATTCGG
CCTTGTCCTCGTGGTCAAGAGCGACTTAAAGAAGCGGCTAAATTGGGCTTTACCGTAGCGGTCATCCCAAAAGCGAATAT
GCCAAAGACCAAGATCGCTGGCTTAAAAGTAATTCCAGTGGAGCGAATCGATCAGGCAATTGCTGTAGCTGCAGAACTTA
GCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(78-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(357-450)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.336

99.559

0.491
  radA Streptococcus mitis SK321

46.028

94.273

0.434
  radA Streptococcus mitis NCTC 12261

46.028

94.273

0.434
  radA Streptococcus pneumoniae Rx1

46.028

94.273

0.434
  radA Streptococcus pneumoniae D39

46.028

94.273

0.434
  radA Streptococcus pneumoniae R6

46.028

94.273

0.434
  radA Streptococcus pneumoniae TIGR4

46.028

94.273

0.434

Multiple sequence alignment