Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   DXE35_RS08205 Genome accession   NZ_LT606949
Coordinates   1524982..1525899 (+) Length   305 a.a.
NCBI ID   WP_231970102.1    Uniprot ID   -
Organism   Polynucleobacter necessarius isolate PPGSP7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1519982..1530899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE35_RS08175 pth 1520261..1520851 (+) 591 WP_114690185.1 aminoacyl-tRNA hydrolase -
  DXE35_RS08180 - 1520869..1521135 (-) 267 WP_114690186.1 YfhL family 4Fe-4S dicluster ferredoxin -
  DXE35_RS08185 coaD 1521161..1521658 (-) 498 WP_114690187.1 pantetheine-phosphate adenylyltransferase -
  DXE35_RS10760 - 1521781..1522068 (-) 288 WP_331851958.1 RsmD family RNA methyltransferase -
  DXE35_RS10765 - 1522087..1522263 (-) 177 WP_231970101.1 hypothetical protein -
  DXE35_RS08195 - 1522241..1523578 (-) 1338 WP_114690188.1 M16 family metallopeptidase -
  DXE35_RS08200 - 1523578..1524942 (-) 1365 WP_114690189.1 M16 family metallopeptidase -
  DXE35_RS08205 pilA 1524982..1525899 (+) 918 WP_231970102.1 signal recognition particle-docking protein FtsY Machinery gene
  DXE35_RS08210 rpoH 1526004..1526927 (+) 924 WP_114690191.1 RNA polymerase sigma factor RpoH -
  DXE35_RS08215 - 1526963..1527547 (-) 585 WP_231970103.1 SCO family protein -
  DXE35_RS08220 cyoE 1527555..1528448 (-) 894 WP_114690422.1 heme o synthase -
  DXE35_RS08225 - 1528451..1529572 (-) 1122 WP_114690193.1 COX15/CtaA family protein -
  DXE35_RS08230 - 1529572..1530228 (-) 657 WP_114690194.1 hypothetical protein -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 32452.13 Da        Isoelectric Point: 6.9095

>NTDB_id=1145206 DXE35_RS08205 WP_231970102.1 1524982..1525899(+) (pilA) [Polynucleobacter necessarius isolate PPGSP7]
MHILNCIDYMFGLRKTLGSLFKSSKVDESWFDALEESLIQSDVGLPTTEQLISKLRKAAKSEKASSPEELRTLLIQEVST
LLTAIEPSPNPLFTSDKPNTPEVWLVVGVNGAGKTTTIGKLCRLFQSQGKSVLLAAGDTFRAAARNQLQEWGGRNQVDVI
TQEGGDAAAVAHDAIHAAISRQSTILIIDTAGRLATQDNLMEELKKVKRVISKALPGAPHHTLLVLDGNTGQNGLSQVKA
FHAALGLTGIIVTKLDGTAKGGVICAIAHTLQDGQKPAVLALGKGEGIDDLAPFTAGHYSSELFN

Nucleotide


Download         Length: 918 bp        

>NTDB_id=1145206 DXE35_RS08205 WP_231970102.1 1524982..1525899(+) (pilA) [Polynucleobacter necessarius isolate PPGSP7]
ATGCATATTTTAAATTGTATCGATTATATGTTCGGCTTACGTAAAACCCTCGGCTCTCTTTTTAAATCAAGCAAGGTTGA
TGAATCTTGGTTTGATGCATTGGAAGAATCACTGATTCAAAGTGATGTGGGCCTACCTACAACTGAACAACTCATCAGCA
AACTACGTAAAGCAGCCAAATCCGAAAAAGCTTCCAGTCCTGAAGAGTTACGAACACTCTTAATTCAAGAAGTCAGCACG
CTATTAACCGCTATTGAACCATCACCAAACCCGCTATTCACAAGCGATAAGCCTAACACCCCAGAGGTATGGCTGGTTGT
AGGGGTAAATGGCGCAGGTAAGACAACGACCATTGGCAAACTCTGCAGACTCTTTCAGTCTCAAGGCAAATCTGTCCTCC
TAGCTGCTGGCGACACCTTTAGAGCCGCCGCACGCAATCAACTCCAAGAGTGGGGCGGACGCAATCAGGTGGATGTCATT
ACCCAAGAAGGCGGTGATGCTGCCGCTGTTGCCCATGATGCGATTCATGCAGCCATCTCGCGTCAAAGCACCATCCTCAT
TATTGATACTGCTGGTCGCCTAGCCACTCAGGACAACCTAATGGAAGAGCTTAAGAAGGTGAAACGCGTCATCAGTAAAG
CGCTACCTGGAGCGCCCCACCACACACTACTCGTTTTAGACGGCAATACAGGGCAGAACGGGTTAAGCCAAGTAAAAGCC
TTTCATGCCGCTCTGGGCCTCACCGGCATCATTGTGACCAAGCTGGATGGCACCGCCAAAGGCGGCGTTATTTGCGCCAT
TGCCCACACCCTACAAGATGGGCAAAAACCCGCTGTTTTAGCCCTAGGCAAAGGCGAGGGAATTGATGATTTAGCCCCCT
TCACAGCAGGGCACTATTCATCAGAATTATTCAATTAA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(13-77)

SRP54-type protein, GTPase domain (SRP54)

(101-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

51.361

96.393

0.495

Multiple sequence alignment