Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   PSM36_RS16980 Genome accession   NZ_LT605205
Coordinates   4360943..4361884 (-) Length   313 a.a.
NCBI ID   WP_076931910.1    Uniprot ID   A0A1R3TF25
Organism   Proteiniphilum saccharofermentans strain M3/6     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4355943..4366884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSM36_RS16960 (PSM36_3457) - 4357706..4358122 (-) 417 WP_076931908.1 EamA family transporter -
  PSM36_RS16965 (PSM36_3458) - 4358133..4359062 (-) 930 WP_076931909.1 siderophore ABC transporter substrate-binding protein -
  PSM36_RS16970 (PSM36_3459) - 4359241..4359999 (-) 759 WP_019538240.1 ABC transporter ATP-binding protein -
  PSM36_RS16975 (PSM36_3460) - 4359996..4360946 (-) 951 WP_083711113.1 iron chelate uptake ABC transporter family permease subunit -
  PSM36_RS16980 (PSM36_3461) ceuB 4360943..4361884 (-) 942 WP_076931910.1 ABC transporter permease Machinery gene
  PSM36_RS16985 (PSM36_3462) - 4362161..4362883 (-) 723 WP_076931911.1 GntR family transcriptional regulator -
  PSM36_RS16990 (PSM36_3463) - 4362985..4363266 (+) 282 WP_076929390.1 hypothetical protein -
  PSM36_RS16995 (PSM36_3464) - 4363272..4364321 (+) 1050 WP_076928998.1 integrase core domain-containing protein -
  PSM36_RS17000 (PSM36_3465) - 4364498..4366237 (+) 1740 WP_394333040.1 class I mannose-6-phosphate isomerase -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 33815.07 Da        Isoelectric Point: 10.0385

>NTDB_id=1145179 PSM36_RS16980 WP_076931910.1 4360943..4361884(-) (ceuB) [Proteiniphilum saccharofermentans strain M3/6]
MRTLILTLVLLVCAVVSLFVGVADISVADIFHWNAEKLALISISRIPRTAALILAGVGMSISGLIMQQMTQNKFVAPTTA
GTLEAAKMGLLIFLIFIPTAGSAIKMILAFLFTFVASLIFLAIVRKIRYRNVVFVPLVGLMFGGIIGSISTFFAVRLNIV
QDTNAWMMGDFSGILQGRYELIYLSLPAIIITYLYANKFTVIGMGEDFSRNLGLNYTAIMNIGLFCVSLTVSAVVITAGA
IPFLGLIVPNVVSLLFGDNLKKTLPLVALSGAIFLLLCDIAGRVVIYPYEVPIGVTVSIIGAIIFLILIIRKR

Nucleotide


Download         Length: 942 bp        

>NTDB_id=1145179 PSM36_RS16980 WP_076931910.1 4360943..4361884(-) (ceuB) [Proteiniphilum saccharofermentans strain M3/6]
TTGAGAACACTTATTCTTACGCTTGTTTTACTTGTGTGTGCGGTGGTATCCCTCTTCGTGGGGGTGGCAGATATCTCTGT
TGCCGATATATTTCATTGGAATGCGGAGAAGTTAGCACTGATCTCTATCAGTCGTATTCCCCGCACGGCTGCACTGATAC
TCGCCGGAGTAGGAATGAGCATATCCGGTTTGATCATGCAGCAGATGACGCAGAATAAGTTTGTGGCTCCTACTACAGCC
GGTACGCTCGAAGCAGCTAAAATGGGGTTGCTTATCTTTCTCATCTTTATTCCTACGGCAGGGTCGGCCATAAAAATGAT
ATTGGCTTTCCTCTTTACGTTTGTTGCCAGCCTCATCTTTCTGGCTATTGTGCGGAAGATACGCTACCGCAACGTAGTGT
TTGTACCGCTGGTGGGATTGATGTTCGGAGGGATCATTGGTTCGATATCCACCTTTTTCGCTGTAAGACTGAACATCGTG
CAGGATACCAATGCCTGGATGATGGGTGATTTTTCGGGTATCCTGCAAGGGCGCTATGAACTGATCTATCTCAGCCTGCC
TGCCATCATTATCACTTACCTCTACGCCAACAAGTTCACTGTCATAGGGATGGGAGAGGATTTTTCCCGGAATCTGGGAT
TGAATTATACAGCAATCATGAATATCGGTCTTTTCTGCGTATCACTCACTGTAAGTGCTGTGGTGATCACTGCGGGCGCC
ATTCCTTTTCTGGGACTGATCGTTCCCAATGTAGTGAGCCTTCTCTTTGGAGATAACCTGAAGAAAACATTGCCTCTGGT
TGCCTTGTCGGGAGCTATTTTTCTCCTGTTATGCGATATTGCCGGTCGGGTGGTGATATACCCCTACGAAGTACCTATCG
GGGTGACGGTAAGTATTATCGGAGCAATCATTTTTCTCATACTGATAATAAGGAAGAGATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R3TF25

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.515

98.722

0.489

Multiple sequence alignment