Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PSM36_RS01935 Genome accession   NZ_LT605205
Coordinates   514068..515435 (+) Length   455 a.a.
NCBI ID   WP_076928551.1    Uniprot ID   A0A1R3SSA3
Organism   Proteiniphilum saccharofermentans strain M3/6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 509068..520435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSM36_RS01920 (PSM36_0386) - 510317..510931 (+) 615 WP_076931986.1 ribonuclease HII -
  PSM36_RS01925 (PSM36_0387) - 511199..511744 (+) 546 WP_076928549.1 hypothetical protein -
  PSM36_RS01930 (PSM36_0388) - 511860..513995 (-) 2136 WP_076928550.1 Tex family protein -
  PSM36_RS01935 (PSM36_0389) radA 514068..515435 (+) 1368 WP_076928551.1 DNA repair protein RadA Machinery gene
  PSM36_RS01945 (PSM36_0391) - 515627..515974 (-) 348 WP_076928552.1 hypothetical protein -
  PSM36_RS01950 (PSM36_0392) - 516130..516705 (+) 576 WP_019541207.1 adenylate kinase -
  PSM36_RS01955 (PSM36_0393) obgE 516708..517856 (+) 1149 WP_076928553.1 GTPase ObgE -
  PSM36_RS01960 (PSM36_0394) pgeF 517866..518684 (+) 819 WP_076928554.1 peptidoglycan editing factor PgeF -
  PSM36_RS01965 (PSM36_0395) - 518768..519343 (-) 576 WP_026327638.1 superoxide dismutase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49782.48 Da        Isoelectric Point: 6.5024

>NTDB_id=1145172 PSM36_RS01935 WP_076928551.1 514068..515435(+) (radA) [Proteiniphilum saccharofermentans strain M3/6]
MAKLKSVYFCSSCGYESPKWMGKCPACGEWSTFVEELVRKDTASKQEDTRSFGEVRSEPVTLSEIKAEELPRIDMDDGEL
NRVLGGGLVPASVVLIGGEPGIGKSTLVLQTILKLSGVKSLYVSGEESAGQLKLRADRIGIQNDDCLIVCETNLDEIFKH
VRKVSPQLLVIDSVQTIYSEVLESSPGSISQVRECASLLLKFAKQSGTPVLLIGHITKEGSIAGPKILEHMVDAVLQFEG
DQHYMYRILRGVKNRFGSTAELAIYEMNRSGLREVSNPSELLLTQNHDGLSGVAIAAAVEGVRPFLIETQALVSTAAYGT
PQRSATGFDIRRMNMLLAVLEKRAGFKLAQKDVFLNIAGGLRVSDPGMDLAVISAVLSSSLDMTIENETCLCGEVGLSGE
IRPVHRIEQRIQEAEKLGFSRILVPFNNLKGFNKKMKIDIQQVKRVSDAFRLLFS

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1145172 PSM36_RS01935 WP_076928551.1 514068..515435(+) (radA) [Proteiniphilum saccharofermentans strain M3/6]
ATGGCGAAACTGAAATCTGTATATTTTTGCTCCAGTTGCGGATATGAATCTCCCAAGTGGATGGGGAAATGTCCTGCCTG
CGGCGAATGGTCGACTTTTGTTGAAGAACTGGTACGTAAGGATACTGCTTCGAAACAGGAAGATACCCGTTCTTTCGGGG
AGGTCAGGAGTGAACCGGTGACTTTGAGCGAGATCAAAGCCGAAGAACTGCCGAGGATCGATATGGATGACGGGGAGTTA
AACCGTGTGTTGGGCGGAGGATTGGTGCCTGCCTCCGTTGTGCTGATCGGAGGAGAGCCGGGCATCGGAAAATCGACATT
GGTGCTCCAAACTATTTTGAAGCTCTCCGGTGTGAAGTCTCTCTATGTATCGGGTGAAGAGAGCGCAGGTCAGTTGAAAC
TGCGTGCCGACCGGATCGGTATACAAAATGATGATTGTCTCATCGTGTGTGAGACCAACCTCGATGAAATTTTTAAGCAT
GTAAGGAAAGTGTCGCCGCAATTGTTGGTTATCGACTCGGTACAGACTATTTACAGCGAAGTGCTGGAATCGTCTCCCGG
TAGTATTTCTCAGGTGCGCGAGTGTGCTTCGTTGCTCCTCAAATTTGCCAAACAATCGGGTACACCTGTGTTACTTATCG
GCCATATCACCAAGGAGGGCAGCATAGCCGGCCCTAAGATACTGGAACATATGGTGGATGCGGTGTTACAGTTTGAAGGC
GATCAGCATTATATGTACCGTATCCTTCGTGGAGTCAAGAATCGGTTTGGAAGTACTGCGGAGTTGGCTATTTATGAGAT
GAACCGGTCGGGATTGCGCGAGGTGAGTAATCCGTCGGAACTGCTGCTTACCCAGAACCATGATGGCCTGAGTGGTGTAG
CTATTGCCGCAGCGGTTGAGGGTGTTCGTCCTTTTCTGATCGAAACGCAGGCTTTGGTAAGTACTGCCGCCTACGGTACG
CCACAACGTTCCGCTACCGGATTTGATATCCGGCGGATGAATATGCTGTTGGCTGTGCTGGAAAAGCGGGCAGGGTTTAA
ACTGGCACAAAAAGATGTCTTCCTTAATATTGCCGGGGGGTTGCGAGTGAGCGATCCTGGTATGGATCTCGCGGTTATCA
GTGCTGTGCTCTCGTCCAGCCTTGATATGACAATTGAAAACGAGACCTGTCTCTGTGGAGAGGTCGGTTTGTCGGGTGAG
ATCCGGCCTGTACATCGTATAGAACAGCGTATTCAGGAGGCCGAAAAACTGGGCTTTTCCCGTATTCTTGTGCCTTTCAA
CAACCTGAAAGGATTCAATAAGAAGATGAAGATCGATATTCAGCAGGTGAAAAGGGTGAGTGACGCTTTCAGATTATTAT
TTTCATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(342-428)

AAA domain (AAA_25)

(80-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R3SSA3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.552

99.56

0.503
  radA Streptococcus mitis SK321

47.368

100

0.475
  radA Streptococcus mitis NCTC 12261

47.149

100

0.473
  radA Streptococcus pneumoniae Rx1

47.149

100

0.473
  radA Streptococcus pneumoniae D39

47.149

100

0.473
  radA Streptococcus pneumoniae R6

47.149

100

0.473
  radA Streptococcus pneumoniae TIGR4

47.149

100

0.473

Multiple sequence alignment