Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   B5474_RS17405 Genome accession   NZ_LT605059
Coordinates   3638964..3639605 (-) Length   213 a.a.
NCBI ID   WP_000201224.1    Uniprot ID   A0A009T8N7
Organism   Acinetobacter baumannii strain NCTC7364     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3633964..3644605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5474_RS17385 (NCTC7364_03484) aroK 3634880..3635449 (-) 570 WP_000643712.1 shikimate kinase AroK -
  B5474_RS17390 (NCTC7364_03485) pilQ 3635461..3637626 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  B5474_RS17395 (NCTC7364_03486) pilP 3637689..3638216 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  B5474_RS17400 (NCTC7364_03487) pilO 3638227..3638967 (-) 741 WP_000076099.1 type 4a pilus biogenesis protein PilO Machinery gene
  B5474_RS17405 (NCTC7364_03488) pilN 3638964..3639605 (-) 642 WP_000201224.1 PilN domain-containing protein Machinery gene
  B5474_RS17410 (NCTC7364_03489) pilM 3639605..3640663 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  B5474_RS17415 (NCTC7364_03490) ponA 3640825..3643380 (+) 2556 WP_079549043.1 penicillin-binding protein PBP1a -
  B5474_RS17420 (NCTC7364_03491) - 3643398..3644222 (-) 825 WP_150123691.1 putative RNA methyltransferase -
  B5474_RS17425 (NCTC7364_03492) - 3644225..3644557 (-) 333 WP_000169598.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24029.39 Da        Isoelectric Point: 5.3968

>NTDB_id=1145168 B5474_RS17405 WP_000201224.1 3638964..3639605(-) (pilN) [Acinetobacter baumannii strain NCTC7364]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1145168 B5474_RS17405 WP_000201224.1 3638964..3639605(-) (pilN) [Acinetobacter baumannii strain NCTC7364]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTCATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATCCAAGGTTTGCAGAGTCAACGTCCAGTGGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCACCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009T8N7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.531

100

0.995
  comN Acinetobacter baylyi ADP1

71.429

98.592

0.704

Multiple sequence alignment