Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   B5474_RS16565 Genome accession   NZ_LT605059
Coordinates   3476464..3477348 (-) Length   294 a.a.
NCBI ID   WP_000914779.1    Uniprot ID   A0A0Q1E5B1
Organism   Acinetobacter baumannii strain NCTC7364     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3471464..3482348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5474_RS16550 (NCTC7364_03314) miaB 3473311..3474762 (+) 1452 WP_049081790.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  B5474_RS16555 (NCTC7364_03315) - 3474800..3475888 (+) 1089 WP_000122983.1 PhoH family protein -
  B5474_RS16560 (NCTC7364_03316) ybeY 3475898..3476374 (+) 477 WP_079548996.1 rRNA maturation RNase YbeY -
  B5474_RS16565 (NCTC7364_03317) tonB2 3476464..3477348 (-) 885 WP_000914779.1 energy transducer TonB Machinery gene
  B5474_RS16570 (NCTC7364_03318) - 3477579..3478250 (+) 672 WP_079548997.1 hypothetical protein -
  B5474_RS16575 (NCTC7364_03319) - 3478408..3479121 (+) 714 WP_031965182.1 DUF3108 domain-containing protein -
  B5474_RS16580 (NCTC7364_03320) - 3479194..3479769 (+) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  B5474_RS16585 (NCTC7364_03321) wrbA 3479822..3480415 (-) 594 WP_021510968.1 NAD(P)H:quinone oxidoreductase -
  B5474_RS16590 (NCTC7364_03322) - 3480703..3481950 (+) 1248 WP_000893466.1 YihY family inner membrane protein -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33652.51 Da        Isoelectric Point: 9.0935

>NTDB_id=1145154 B5474_RS16565 WP_000914779.1 3476464..3477348(-) (tonB2) [Acinetobacter baumannii strain NCTC7364]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIRPTEDVIKHADFLAQADQQGSGA
FREAHRMSSNSPTPMPSDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDANMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=1145154 B5474_RS16565 WP_000914779.1 3476464..3477348(-) (tonB2) [Acinetobacter baumannii strain NCTC7364]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCATCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCGTCCTACTGAAGATGTGATCAAGCATGCAGACTTTTTAGCTCAAGCCGATCAACAAGGTTCAGGAGCT
TTTCGGGAAGCTCATCGGATGTCGAGTAACTCTCCAACGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAGCGTCAGCAAGATTTTAGTCGCCAACAAAAGATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCAGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGCCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCGTTTGGCCGTTTTGA
TGCAAATATGAAAGATATTTCAGAGCTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q1E5B1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

99.66

100

0.997

Multiple sequence alignment