Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0J   Type   Regulator
Locus tag   STACADC2_RS09235 Genome accession   NZ_LT604076
Coordinates   1730832..1731599 (+) Length   255 a.a.
NCBI ID   WP_087010238.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ACA-DC     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1725832..1736599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STACADC2_RS09220 (STACADC2_1777) - 1728148..1728831 (-) 684 WP_011226711.1 YoaK family protein -
  STACADC2_RS09225 (STACADC2_1778) rlmH 1728847..1729326 (-) 480 WP_084829945.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  STACADC2_RS09230 (STACADC2_1779) htrA 1729531..1730766 (+) 1236 WP_087010237.1 S1C family serine protease Regulator
  STACADC2_RS09235 (STACADC2_1780) spo0J 1730832..1731599 (+) 768 WP_087010238.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 255 a.a.        Molecular weight: 29513.96 Da        Isoelectric Point: 9.6763

>NTDB_id=1145117 STACADC2_RS09235 WP_087010238.1 1730832..1731599(+) (spo0J) [Streptococcus thermophilus strain ACA-DC]
MSEQLKTLSISEIYPNPFQPRLKFSDEELVELSQSISENGLIQPIIVRKSDIIGYELIAGERRLRACKRLGMTEIPAVVK
EVTDQESRKQAIIENLQRSNLNPIEEAKAYRNLIDELTYSHEELAKAMGKSRPYISNALRLLQLPREIQTSIENGSLSQG
HARALLAIEDSRKQLTIFQQVVAERWSVRTLEKKLQELPRKQKSKKDIHVKDKEKELERLLGLPITLRYHKNHSGTIQIH
FSTEEDFNRIINRLI

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1145117 STACADC2_RS09235 WP_087010238.1 1730832..1731599(+) (spo0J) [Streptococcus thermophilus strain ACA-DC]
ATGTCAGAACAACTCAAAACTTTATCTATTAGTGAAATTTACCCCAATCCTTTTCAACCTCGTCTAAAATTCTCCGATGA
AGAGTTAGTAGAACTAAGTCAATCAATATCAGAAAATGGTTTAATACAGCCAATTATTGTACGAAAATCTGACATTATTG
GTTATGAACTAATTGCTGGAGAAAGACGTTTACGAGCCTGTAAACGTTTAGGGATGACAGAAATCCCTGCAGTTGTAAAG
GAAGTTACAGATCAAGAGAGTCGTAAACAAGCTATTATTGAAAATCTACAACGATCAAATCTCAATCCTATTGAAGAAGC
AAAGGCCTATCGTAATTTAATTGATGAGTTAACTTATAGTCACGAGGAGCTCGCTAAAGCTATGGGAAAATCTAGACCAT
ATATTAGTAACGCTCTTAGACTACTACAACTTCCGCGAGAGATACAAACGAGTATTGAAAACGGAAGTCTGAGTCAGGGA
CATGCTAGAGCACTCTTAGCTATTGAGGATTCTCGAAAGCAGTTAACCATCTTTCAGCAGGTTGTGGCTGAAAGATGGTC
TGTTCGTACTCTAGAAAAAAAACTTCAGGAACTTCCTAGAAAACAAAAATCTAAAAAAGATATCCATGTAAAAGATAAAG
AAAAAGAACTTGAAAGATTACTAGGTCTCCCTATAACTCTACGTTATCACAAAAATCACTCAGGAACGATTCAAATACAC
TTTTCGACAGAAGAAGATTTTAACAGAATTATCAACAGGCTTATCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

56.471

100

0.565


Multiple sequence alignment