Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   STACADC2_RS02205 Genome accession   NZ_LT604076
Coordinates   402150..402593 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ACA-DC     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 397150..407593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STACADC2_RS02185 (STACADC2_0379) - 397715..398467 (-) 753 WP_087009712.1 NUDIX domain-containing protein -
  STACADC2_RS02190 (STACADC2_0380) - 398531..399637 (-) 1107 WP_087009713.1 AAA family ATPase -
  STACADC2_RS02195 (STACADC2_0381) gdhA 399981..401333 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  STACADC2_RS02200 (STACADC2_0382) - 401590..402000 (+) 411 WP_087009714.1 peptide deformylase -
  STACADC2_RS02205 (STACADC2_0383) rcrR 402150..402593 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  STACADC2_RS02210 (STACADC2_0384) rcrP 402597..404411 (+) 1815 WP_087009715.1 ABC transporter ATP-binding protein Regulator
  STACADC2_RS02215 (STACADC2_0385) rcrQ 404401..406179 (+) 1779 WP_087009716.1 ABC transporter ATP-binding protein Regulator
  STACADC2_RS02220 (STACADC2_0386) - 406335..406706 (+) 372 WP_224103327.1 GNAT family acetyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=1145075 STACADC2_RS02205 WP_002945408.1 402150..402593(+) (rcrR) [Streptococcus thermophilus strain ACA-DC]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=1145075 STACADC2_RS02205 WP_002945408.1 402150..402593(+) (rcrR) [Streptococcus thermophilus strain ACA-DC]
ATGCATGGGAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAATAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537

Multiple sequence alignment