Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   BQ1177_RS06415 Genome accession   NZ_LT604074
Coordinates   1320976..1322793 (+) Length   605 a.a.
NCBI ID   WP_087118620.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius isolate LPM01     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1315976..1327793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BQ1177_RS06400 - 1317419..1319065 (+) 1647 WP_011475732.1 phosphoenolpyruvate carboxykinase (ATP) -
  BQ1177_RS06405 - 1319169..1319930 (+) 762 WP_087118619.1 adaptor protein MecA -
  BQ1177_RS06410 - 1319979..1320878 (+) 900 WP_081511876.1 competence protein CoiA -
  BQ1177_RS06415 pepF 1320976..1322793 (+) 1818 WP_087118620.1 oligoendopeptidase F Regulator
  BQ1177_RS06420 - 1322883..1323479 (-) 597 WP_162853479.1 ClpXP adapter SpxH family protein -
  BQ1177_RS06425 - 1323656..1324510 (+) 855 WP_087118621.1 phosphate ABC transporter substrate-binding protein PstS family protein -
  BQ1177_RS06430 pstC 1324521..1325438 (+) 918 WP_003702917.1 phosphate ABC transporter permease subunit PstC -
  BQ1177_RS06435 pstA 1325438..1326328 (+) 891 WP_003701551.1 phosphate ABC transporter permease PstA -
  BQ1177_RS06440 pstB 1326333..1327127 (+) 795 WP_003702915.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 70613.77 Da        Isoelectric Point: 5.4532

>NTDB_id=1145051 BQ1177_RS06415 WP_087118620.1 1320976..1322793(+) (pepF) [Ligilactobacillus salivarius isolate LPM01]
MSEKKAKRLLQRNEVPEELTWDLTKVFKSDEEFEKEYQTVKDEVQNFRKLQGTMDQGSQRFLQIIENFLSINRKFEKVYV
YASMRNDQDTTNAKYQGYNEMVDALAAEFSESISWFEPELLELDEDKLKQYFVEKKELKQYEHLIESMLVMRKHTLDKKS
ESLLAGASDIFGTSQNVFGILNNADLKFPIVKDDNGDDIQLSHGVYGKLIESTNRKVRKAAFKGLYSVYDQFKHTMATTL
IGNVKVHNFKARVRNYKDAREAATTSNYIPTEVYDVLLEQVHKNLPLLHRYVKLRKKILGVDELHMYDMYTPLTEDSKLT
YNYIQAQIEAKKALEVLGMDYLTHVSEAFENRWIDVVENKGKRSGAYSSGVYDTPPYILLNWQDNLENLFTLVHEMGHSM
HSYYTSHNQPYQYGDYPIFLAEIASTTNENILTDYLLKNNDEKEILIYILNHYLDGFKGTVYRQTQFAEFEKWIHEQNSK
GVPLTAKSISEYYLELNKKYYGNDVVSDPEIALEWARIPHFYYNFYVYQYATGFAAATTLAENILSGDENKLNKYLTYLK
AGSSKYPLEVMKDAGVDMTDSSYLEKAFKVFEERLNQLETLLSEK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=1145051 BQ1177_RS06415 WP_087118620.1 1320976..1322793(+) (pepF) [Ligilactobacillus salivarius isolate LPM01]
ATGTCTGAAAAGAAAGCAAAAAGATTACTTCAGAGAAATGAAGTTCCAGAAGAATTAACGTGGGATTTAACAAAAGTATT
TAAAAGTGATGAAGAGTTTGAAAAGGAATACCAAACTGTAAAAGATGAGGTACAGAACTTCAGAAAATTACAAGGTACAA
TGGATCAAGGTAGTCAAAGATTTTTACAAATCATTGAAAATTTCTTAAGTATTAATAGGAAATTTGAAAAAGTTTATGTA
TATGCAAGTATGAGAAATGATCAAGATACTACAAACGCTAAGTATCAAGGATATAATGAAATGGTTGATGCATTAGCTGC
TGAATTTTCAGAATCTATATCCTGGTTCGAACCTGAGTTACTAGAATTAGATGAAGATAAATTAAAGCAATATTTTGTAG
AAAAAAAAGAATTAAAACAGTATGAACATTTAATTGAGAGTATGTTGGTCATGAGAAAGCATACGCTTGATAAAAAAAGT
GAGTCTTTATTAGCTGGAGCTAGTGATATCTTTGGGACATCGCAAAATGTTTTTGGCATTTTAAACAACGCAGATCTAAA
GTTTCCAATAGTAAAAGATGATAATGGTGATGATATTCAATTATCGCATGGTGTTTATGGAAAATTAATAGAATCTACAA
ATAGGAAAGTTAGAAAAGCTGCATTCAAGGGATTATACAGTGTTTATGACCAATTTAAGCATACAATGGCGACAACATTA
ATTGGAAATGTTAAGGTGCATAACTTTAAAGCAAGAGTTCGTAATTATAAAGATGCTAGAGAAGCTGCCACAACATCTAA
TTATATTCCAACAGAAGTCTATGATGTATTACTGGAACAAGTACACAAAAATCTTCCATTATTACATCGCTATGTAAAGC
TTAGAAAGAAAATATTAGGTGTCGATGAACTCCATATGTATGATATGTATACACCGTTAACTGAAGATAGTAAGCTTACT
TATAATTATATTCAAGCGCAAATTGAAGCAAAAAAGGCACTTGAAGTATTGGGAATGGATTATTTAACGCACGTTAGTGA
AGCATTTGAAAATCGTTGGATAGATGTAGTTGAAAATAAAGGAAAGAGAAGTGGAGCATATTCATCAGGAGTTTATGATA
CTCCGCCATATATCTTATTAAATTGGCAAGATAATTTAGAAAATCTTTTTACCTTGGTACATGAGATGGGACATAGTATG
CATAGTTATTACACTAGTCATAATCAACCCTATCAGTATGGAGATTACCCAATATTTTTGGCAGAAATAGCTTCAACTAC
TAATGAAAATATTTTGACGGATTATCTATTAAAGAATAACGATGAAAAAGAGATATTAATCTATATTTTAAATCATTATT
TAGATGGATTTAAAGGTACGGTATATCGTCAAACACAATTTGCAGAATTTGAAAAATGGATTCATGAACAGAATTCAAAA
GGAGTACCACTAACTGCTAAATCAATTTCTGAATATTACTTAGAATTAAATAAGAAATATTATGGCAATGATGTAGTAAG
CGATCCTGAGATAGCTTTAGAGTGGGCTAGAATTCCGCATTTTTATTATAATTTCTATGTTTATCAATATGCGACAGGAT
TTGCAGCAGCAACTACTTTAGCTGAAAATATTTTATCTGGCGATGAAAATAAATTAAACAAATATTTAACTTACTTAAAA
GCTGGTAGTAGTAAATATCCATTGGAAGTCATGAAAGATGCAGGTGTGGATATGACAGATTCTTCATATTTGGAGAAAGC
ATTTAAAGTTTTTGAAGAAAGATTAAATCAATTAGAAACATTATTGTCAGAAAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(209-589)

Oligopeptidase F (Peptidase_M3_N)

(119-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.209

97.851

0.521

Multiple sequence alignment