Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BQ1177_RS01645 Genome accession   NZ_LT604074
Coordinates   338900..340273 (-) Length   457 a.a.
NCBI ID   WP_035149896.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius isolate LPM01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 333900..345273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BQ1177_RS01625 - 334180..334587 (-) 408 WP_003700685.1 Mini-ribonuclease 3 -
  BQ1177_RS01630 cysS 334580..335992 (-) 1413 WP_003702615.1 cysteine--tRNA ligase -
  BQ1177_RS01635 gltX 336144..337631 (-) 1488 WP_003700687.1 glutamate--tRNA ligase -
  BQ1177_RS01640 - 337762..338874 (-) 1113 WP_003700688.1 PIN/TRAM domain-containing protein -
  BQ1177_RS01645 radA 338900..340273 (-) 1374 WP_035149896.1 DNA repair protein RadA Machinery gene
  BQ1177_RS01650 - 340291..340827 (-) 537 WP_049153884.1 dUTP diphosphatase -
  BQ1177_RS01655 - 340983..341261 (+) 279 WP_049153883.1 GNAT family N-acetyltransferase -
  BQ1177_RS01660 - 341350..342684 (+) 1335 WP_087118362.1 aminopeptidase C -
  BQ1177_RS01665 - 342893..343246 (+) 354 WP_003710547.1 bacteriocin immunity protein -
  BQ1177_RS01670 - 343413..344087 (-) 675 WP_003706506.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase -
  BQ1177_RS01675 - 344109..345053 (-) 945 WP_049153881.1 AEC family transporter -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49736.40 Da        Isoelectric Point: 8.0254

>NTDB_id=1145038 BQ1177_RS01645 WP_035149896.1 338900..340273(-) (radA) [Ligilactobacillus salivarius isolate LPM01]
MAKTKTRYVCQNCEYISPRYLGRCPNCGSWNSLVEEIEKKESTTKAQPRVSISGTTVKPKLIDDVSTVETPRFKTNLEEL
NRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSGQLSTLGKKVLYVSGEESATQIKLRADRLGVHGTELYLYPETDMDSIR
KNIELLKPDFVVIDSVQTMQEPEMTAAVGSVSQIREVTGDLMQIAKTNGITVFVVGHVTKGGAIAGPKILEHMVDTVLYF
EGDQHRTFRILRAVKNRFGSTNEIGIFEMKNGGLSEVANPSEIFLEERLKGATGSAVVASLEGTRPILVELQALVTPTAF
GNAKRTTTGLDHNRVALLMAVLEKRAGLLLQNQDAYLKAAGGVKLDEPAIDLAIAVSLVSSYRDAETRPTDCFIGEVGLT
GEIRRVNRIEQRVVEAAKLGFKRVFLPKNNLDGWMPPKEIEVVGVSTLNQALKLIFS

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=1145038 BQ1177_RS01645 WP_035149896.1 338900..340273(-) (radA) [Ligilactobacillus salivarius isolate LPM01]
TTGGCGAAAACTAAGACAAGATATGTTTGTCAAAATTGTGAATATATCTCTCCACGTTATTTAGGACGTTGCCCTAATTG
TGGTTCTTGGAATAGCTTGGTAGAGGAAATAGAGAAAAAGGAAAGTACAACTAAAGCACAACCTAGAGTTAGTATCTCTG
GTACAACAGTGAAACCTAAATTAATTGATGATGTTTCTACTGTAGAAACTCCAAGATTTAAAACTAATTTAGAAGAATTG
AATCGTGTTTTAGGCGGCGGAATTGTTCCCGGATCTTTAGTGTTAATTGGTGGAGATCCAGGTATTGGCAAGTCTACATT
ATTACTACAAGTTTCTGGACAATTATCTACTCTCGGGAAAAAAGTTCTTTATGTTTCTGGGGAAGAAAGTGCAACTCAAA
TTAAATTACGTGCGGATCGTTTAGGAGTTCATGGAACTGAGCTATATTTATATCCTGAAACAGATATGGATAGTATTAGA
AAAAATATTGAACTTTTAAAGCCTGATTTTGTTGTAATCGATTCGGTGCAGACAATGCAGGAGCCAGAAATGACAGCCGC
AGTTGGAAGTGTTTCTCAAATTAGGGAAGTAACTGGAGATTTGATGCAAATTGCGAAAACTAATGGGATAACGGTCTTTG
TTGTAGGACATGTTACTAAAGGTGGAGCAATTGCAGGGCCTAAAATTTTAGAACACATGGTAGATACTGTTCTTTATTTT
GAGGGAGATCAACATAGAACATTTAGAATTTTACGAGCTGTTAAAAATAGATTTGGTTCAACTAATGAAATTGGAATCTT
TGAAATGAAAAATGGAGGATTAAGCGAAGTTGCTAATCCATCAGAGATTTTTCTAGAAGAAAGATTAAAAGGGGCTACGG
GATCAGCTGTCGTTGCTTCTCTTGAAGGAACTAGACCCATATTGGTAGAATTACAAGCACTAGTAACACCGACTGCATTT
GGAAATGCTAAGCGAACAACAACTGGTTTAGATCACAATCGAGTTGCGTTACTGATGGCAGTACTTGAAAAAAGAGCTGG
TTTGTTATTGCAAAATCAGGATGCTTATTTGAAGGCTGCTGGTGGAGTGAAGTTAGATGAGCCAGCAATAGATTTAGCCA
TTGCTGTTAGTTTAGTTTCTAGTTATCGCGATGCAGAAACAAGACCAACTGACTGTTTTATAGGGGAAGTGGGATTAACT
GGTGAAATAAGACGAGTTAATCGTATTGAACAGCGTGTTGTTGAGGCTGCTAAGCTAGGATTTAAGCGAGTATTTTTACC
AAAGAACAACTTAGATGGTTGGATGCCTCCAAAAGAGATTGAAGTAGTAGGCGTAAGTACACTAAATCAAGCATTAAAAC
TAATTTTTAGTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(364-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(67-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

68.49

100

0.685
  radA Streptococcus mitis SK321

68.271

100

0.683
  radA Streptococcus pneumoniae Rx1

68.271

100

0.683
  radA Streptococcus pneumoniae D39

68.271

100

0.683
  radA Streptococcus pneumoniae R6

68.271

100

0.683
  radA Streptococcus pneumoniae TIGR4

68.271

100

0.683
  radA Bacillus subtilis subsp. subtilis str. 168

65.563

99.125

0.65

Multiple sequence alignment