Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BGLY_RS08390 Genome accession   NZ_LT603683
Coordinates   1637152..1637439 (+) Length   95 a.a.
NCBI ID   WP_046132238.1    Uniprot ID   A0AAE2EKV1
Organism   Bacillus glycinifermentans isolate BGLY     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1632152..1642439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGLY_RS08370 (BGLY_1652) - 1632364..1633983 (+) 1620 WP_046132242.1 ABC-F family ATP-binding cassette domain-containing protein -
  BGLY_RS08380 (BGLY_1654) - 1634310..1635542 (-) 1233 WP_046132240.1 aminopeptidase -
  BGLY_RS24265 (BGLY_1655) - 1635631..1635762 (-) 132 WP_096891714.1 protein YkpC -
  BGLY_RS08385 (BGLY_1656) mreBH 1635836..1636843 (-) 1008 WP_046132239.1 rod-share determining protein MreBH -
  BGLY_RS08390 (BGLY_1657) abrB 1637152..1637439 (+) 288 WP_046132238.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BGLY_RS08395 (BGLY_1658) - 1637641..1638963 (+) 1323 WP_046132237.1 ATP-binding protein -
  BGLY_RS08400 (BGLY_1659) - 1639049..1639714 (+) 666 WP_046132236.1 potassium channel family protein -
  BGLY_RS08405 (BGLY_1660) ade 1639850..1641556 (+) 1707 WP_396335476.1 adenine deaminase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10625.43 Da        Isoelectric Point: 7.9575

>NTDB_id=1144974 BGLY_RS08390 WP_046132238.1 1637152..1637439(+) (abrB) [Bacillus glycinifermentans isolate BGLY]
MKSIGVVRKVDELGRIVMPIELRRALDISIKDSIEFFVDKDKIVLKKYKPYGVCLITGEITSENREYGNGNITLSPDGAK
LLLEELKSALDQAKS

Nucleotide


Download         Length: 288 bp        

>NTDB_id=1144974 BGLY_RS08390 WP_046132238.1 1637152..1637439(+) (abrB) [Bacillus glycinifermentans isolate BGLY]
TTGAAATCCATAGGAGTTGTGAGAAAAGTAGATGAACTCGGCCGCATTGTGATGCCGATTGAATTGAGAAGGGCGCTTGA
TATCTCAATCAAGGACAGCATTGAATTTTTCGTTGACAAGGATAAAATCGTTTTGAAAAAATATAAACCTTACGGCGTTT
GTCTGATAACCGGAGAGATTACATCCGAAAACCGCGAATACGGAAACGGAAACATTACGCTCAGCCCGGATGGCGCCAAA
TTGCTTTTGGAAGAACTCAAAAGCGCGCTGGACCAGGCCAAATCGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

51.064

98.947

0.505

Multiple sequence alignment