Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   BGLY_RS06530 Genome accession   NZ_LT603683
Coordinates   1306910..1308727 (+) Length   605 a.a.
NCBI ID   WP_281503742.1    Uniprot ID   -
Organism   Bacillus glycinifermentans isolate BGLY     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1301910..1313727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGLY_RS06505 (BGLY_1261) - 1302669..1303247 (+) 579 WP_046131213.1 GNAT family N-acetyltransferase -
  BGLY_RS06510 (BGLY_1262) spxA 1303424..1303819 (+) 396 WP_046131212.1 transcriptional regulator SpxA -
  BGLY_RS06515 (BGLY_1263) - 1303868..1304530 (-) 663 WP_046131211.1 TerC family protein -
  BGLY_RS24485 - 1304682..1304807 (+) 126 Protein_1243 hypothetical protein -
  BGLY_RS06520 (BGLY_1264) mecA 1304789..1305427 (+) 639 WP_046131210.1 adaptor protein MecA Regulator
  BGLY_RS06525 (BGLY_1265) - 1305549..1306697 (+) 1149 WP_046131209.1 competence protein CoiA -
  BGLY_RS06530 (BGLY_1266) pepF 1306910..1308727 (+) 1818 WP_281503742.1 oligoendopeptidase F Regulator
  BGLY_RS24740 (BGLY_1267) - 1308780..1308947 (-) 168 WP_046131207.1 hypothetical protein -
  BGLY_RS06535 (BGLY_1268) - 1309356..1310189 (-) 834 WP_396335446.1 ClpXP adapter SpxH family protein -
  BGLY_RS06540 (BGLY_1269) - 1310246..1310644 (-) 399 WP_046131205.1 thiol management oxidoreductase -
  BGLY_RS06545 (BGLY_1270) - 1310929..1311594 (-) 666 WP_046131204.1 lytic transglycosylase domain-containing protein -
  BGLY_RS06550 (BGLY_1271) - 1311607..1312179 (-) 573 WP_046131203.1 CYTH domain-containing protein -
  BGLY_RS06555 (BGLY_1272) - 1312308..1312673 (+) 366 WP_046131202.1 hypothetical protein -
  BGLY_RS06560 (BGLY_1273) - 1312704..1313339 (+) 636 WP_046131201.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69942.49 Da        Isoelectric Point: 4.7538

>NTDB_id=1144969 BGLY_RS06530 WP_281503742.1 1306910..1308727(+) (pepF) [Bacillus glycinifermentans isolate BGLY]
MAEENQTKKLPARDEVKQEDTWRLEDIFSSDEAWNKEFQAVKELLPKLSEFKGKLGHSADDLYEALTYQDKVMERLGKLY
TYAHMRYDQDTGNSFYQGLNDKASNLYTQAASATAYMVPEILSIQEDKLQQFLLEKEELKLYSHALEEINKERPHVLSEE
EEGLLAEASDVLSSPSTTFGMLNNADMEFPEITDEDGEKRQLTHGNYITFLESENRDVRREAFKAVYDTYGRFKNTLAST
LSGAVKKDNFYAKVKHYKSAREAALSRNSIPEEVYDNLVETINKYLPLLHRYVELRKQVLELDEVHMYDLYTPLVKDAGM
KVTYEQAKDYMLKGLAPLGEEYSSILKEGLNNRWVDVYENKGKRSGAYSSGTYGTNPYILMNWQDNVNNLFTLVHEFGHS
VHSYYTRKHQPYPYGNYSIFVAEVASTTNEALLGDYLLNTVDDEKQRLYILNHMLEGFKGTVFRQTMFAEFEHAIHVKAQ
EGEPLTPELLTSIYYDLNKKYFGENIEIDKEIGLEWARIPHFYYNYYVYQYATGYSAAQALSQQILKEGKPAVDRYIEFL
KAGSSDYPIEVLKKAGVDMTSSEPIEAACKKFEEQLNEMEELLLK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=1144969 BGLY_RS06530 WP_281503742.1 1306910..1308727(+) (pepF) [Bacillus glycinifermentans isolate BGLY]
GTGGCTGAAGAAAATCAAACGAAAAAACTGCCTGCAAGAGATGAGGTGAAGCAAGAAGACACGTGGAGACTTGAGGATAT
CTTTTCATCCGATGAAGCTTGGAACAAGGAATTTCAAGCGGTCAAAGAGCTGCTGCCTAAGCTTTCCGAATTCAAGGGAA
AGCTCGGTCATTCCGCCGACGATCTATATGAAGCATTGACATATCAGGACAAAGTCATGGAAAGGCTCGGCAAGCTGTAT
ACTTACGCCCATATGCGCTATGATCAGGACACCGGCAATTCGTTTTATCAAGGGTTAAATGACAAAGCGTCCAACCTTTA
TACACAGGCTGCCAGTGCGACGGCCTACATGGTGCCGGAAATTTTATCGATACAGGAGGATAAGCTCCAGCAGTTCCTTT
TGGAAAAAGAGGAACTGAAGCTCTACTCGCACGCGCTTGAAGAAATCAACAAAGAACGGCCTCATGTGCTGAGCGAAGAG
GAAGAAGGGCTGCTTGCCGAGGCATCGGATGTTCTGTCATCGCCGTCCACTACATTTGGCATGCTCAATAACGCCGATAT
GGAATTTCCGGAAATTACCGATGAAGACGGAGAAAAGCGCCAGCTGACTCACGGGAACTACATCACCTTTTTGGAAAGCG
AGAACCGCGACGTCCGCCGTGAAGCTTTCAAGGCGGTATATGATACGTACGGCCGTTTTAAAAACACCCTTGCATCGACC
CTCAGCGGCGCTGTCAAAAAAGATAATTTTTATGCGAAGGTAAAGCACTATAAATCGGCGAGAGAAGCTGCGCTGTCGCG
CAACAGCATTCCGGAAGAGGTTTATGATAATCTCGTCGAAACGATTAATAAATACTTGCCGCTTCTTCACCGCTATGTGG
AGCTCAGAAAACAAGTGCTCGAACTGGATGAAGTTCACATGTATGACCTGTACACGCCGCTTGTAAAAGATGCCGGCATG
AAAGTGACGTATGAACAAGCGAAAGATTACATGCTGAAAGGGCTCGCTCCTTTAGGGGAGGAATACTCGTCCATCCTGAA
GGAAGGCTTGAACAACCGCTGGGTCGATGTTTACGAAAACAAAGGAAAGCGGAGCGGGGCTTACTCATCAGGAACATACG
GAACAAATCCGTACATTTTGATGAACTGGCAGGACAACGTCAACAACCTGTTTACGCTTGTCCATGAATTCGGCCATTCC
GTCCACAGTTATTATACGAGAAAGCATCAGCCGTATCCGTACGGAAACTACAGCATTTTCGTCGCTGAAGTCGCATCAAC
GACAAATGAAGCCCTTTTAGGGGACTACCTGCTGAACACAGTCGACGACGAAAAGCAGCGGCTGTATATTTTAAACCACA
TGCTTGAAGGCTTTAAAGGAACAGTTTTCAGACAGACGATGTTCGCCGAATTCGAACATGCGATTCATGTCAAAGCCCAG
GAAGGCGAACCGCTGACTCCTGAGCTGCTGACAAGCATCTATTACGATTTGAACAAAAAGTACTTCGGAGAAAACATTGA
AATCGATAAAGAAATCGGTCTTGAATGGGCAAGGATTCCTCATTTCTACTACAATTATTACGTATATCAATACGCGACAG
GCTACAGCGCCGCACAGGCCCTGAGCCAGCAGATTTTAAAAGAAGGGAAGCCGGCTGTTGACCGCTATATCGAATTCTTA
AAAGCCGGAAGCTCCGATTATCCGATTGAAGTACTGAAAAAAGCGGGTGTCGACATGACATCCTCAGAACCGATTGAAGC
TGCATGCAAGAAGTTTGAAGAGCAGCTGAATGAAATGGAAGAGCTTCTCTTGAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(210-589)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.096

98.017

0.501

Multiple sequence alignment