Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   BGLY_RS00020 Genome accession   NZ_LT603683
Coordinates   3040..4152 (+) Length   370 a.a.
NCBI ID   WP_046129446.1    Uniprot ID   A0AAE2ER04
Organism   Bacillus glycinifermentans isolate BGLY     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGLY_RS00005 (BGLY_0001) dnaA 1..1344 (+) 1344 WP_046129443.1 chromosomal replication initiator protein DnaA -
  BGLY_RS00010 (BGLY_0002) dnaN 1513..2649 (+) 1137 WP_046129444.1 DNA polymerase III subunit beta -
  BGLY_RS00015 (BGLY_0003) yaaA 2809..3024 (+) 216 WP_046129445.1 S4 domain-containing protein YaaA -
  BGLY_RS00020 (BGLY_0004) recF 3040..4152 (+) 1113 WP_046129446.1 DNA replication/repair protein RecF Machinery gene
  BGLY_RS00025 remB 4170..4412 (+) 243 WP_046129447.1 extracellular matrix regulator RemB -
  BGLY_RS00030 (BGLY_0005) gyrB 4460..6388 (+) 1929 WP_046129448.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  BGLY_RS00035 (BGLY_0006) gyrA 6564..9023 (+) 2460 WP_046129449.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42368.23 Da        Isoelectric Point: 6.9441

>NTDB_id=1144949 BGLY_RS00020 WP_046129446.1 3040..4152(+) (recF) [Bacillus glycinifermentans isolate BGLY]
MYIQNLTLSSYRNYERVELEFENKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDKELIRWDQDYAKIEGRVIKKNGP
VPIQLVISKKGKKGKVNHIEQQKLSQYVGAVNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSHYQKILSQR
NHFLKQLQTRKQTDQTMLDVLTEQLTEFAAKVVMKRLQFVDQLEKWAQPIHSGISRGLEELTLKYHTSLHVSDSPDLSKM
INSYQESFSKLRDKEIERGVSLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIQEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHQTLNEAGIFRVANGALLD

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=1144949 BGLY_RS00020 WP_046129446.1 3040..4152(+) (recF) [Bacillus glycinifermentans isolate BGLY]
TTGTATATCCAAAATCTTACATTATCATCTTACCGCAACTATGAGCGCGTTGAGCTCGAATTTGAAAACAAAGTGAACGT
GATTATCGGAGAGAACGCACAAGGCAAGACAAATTTGATGGAAGCGATCTACGTGCTTGCGATGGCAAAATCTCACCGGA
CCTCTAATGACAAAGAACTCATACGGTGGGATCAAGACTATGCTAAAATAGAAGGCAGGGTCATTAAAAAAAACGGTCCT
GTTCCAATCCAGCTCGTCATTTCCAAAAAAGGCAAAAAAGGAAAGGTCAATCATATTGAACAGCAGAAACTGAGCCAATA
TGTAGGCGCCGTTAACACGATCATGTTTGCTCCTGAAGATTTGAATCTTGTAAAAGGTAGCCCGCAGGTCAGGAGAAGAT
TTCTTGACATGGAAATCGGCCAAGTGTCACCCGTCTATCTTCATGACCTTTCTCATTACCAAAAAATCCTTTCACAGCGC
AACCATTTCTTGAAGCAGCTACAAACGAGAAAACAGACAGATCAGACGATGCTTGACGTGCTGACGGAACAGCTTACGGA
ATTCGCGGCAAAGGTTGTGATGAAGCGGCTTCAATTTGTTGATCAGCTCGAAAAATGGGCTCAGCCCATCCATTCCGGAA
TTTCGCGAGGTCTGGAAGAACTGACGTTAAAGTATCATACGTCTCTTCACGTATCAGATTCGCCTGATTTGTCGAAAATG
ATCAATAGTTACCAAGAATCGTTTTCTAAATTAAGAGATAAAGAAATTGAACGGGGCGTTTCTTTGTCCGGCCCCCACAG
AGACGATGTTCTGTTCTACGTCAACGGCCGGGATGTCCAAACCTACGGTTCACAAGGGCAGCAGCGGACGACTGCATTAT
CTCTTAAATTGGCGGAAATTGATTTGATTCAGGAAGAAATTGGGGAATATCCGATTTTGCTTTTGGATGATGTATTATCA
GAGCTTGACGACTATCGGCAGTCTCACTTGCTCCACACCATTCAAGGGCGTGTTCAAACTTTCGTGACAACGACAAGCGT
CGACGGGATTGATCATCAAACCTTAAACGAAGCAGGAATCTTTCGTGTTGCAAATGGCGCGCTATTGGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

89.16

99.73

0.889

Multiple sequence alignment