Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   R2K29_RS16120 Genome accession   NZ_LT599825
Coordinates   3301657..3302286 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate E. coli NRZ14408     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3296657..3307286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2K29_RS16105 helD 3296899..3298953 (-) 2055 WP_001314607.1 DNA helicase IV -
  R2K29_RS16110 yccF 3299076..3299522 (+) 447 WP_001261235.1 YccF domain-containing protein -
  R2K29_RS16115 yccS 3299532..3301694 (+) 2163 WP_000875041.1 YccS family putative transporter -
  R2K29_RS16120 sxy/tfoX 3301657..3302286 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  R2K29_RS16125 sulA 3302505..3303014 (+) 510 WP_000288705.1 SOS-induced cell division inhibitor SulA -
  R2K29_RS16130 ompA 3303371..3304423 (+) 1053 WP_000750418.1 porin OmpA -
  R2K29_RS16135 matP 3304499..3304951 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  R2K29_RS16140 ycbZ 3305137..3306897 (+) 1761 WP_001589979.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1144919 R2K29_RS16120 WP_000839153.1 3301657..3302286(-) (sxy/tfoX) [Escherichia coli isolate E. coli NRZ14408]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1144919 R2K29_RS16120 WP_000839153.1 3301657..3302286(-) (sxy/tfoX) [Escherichia coli isolate E. coli NRZ14408]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCTGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment