Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   LLA12_RS11715 Genome accession   NZ_LT599049
Coordinates   2381110..2381385 (-) Length   91 a.a.
NCBI ID   WP_021721873.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain A12     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 2376564..2381029 2381110..2381385 flank 81


Gene organization within MGE regions


Location: 2376564..2381385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLA12_RS11695 (LLA12_02480) - 2378036..2378845 (-) 810 WP_032946979.1 metal ABC transporter permease -
  LLA12_RS11700 (LLA12_02481) - 2378838..2379575 (-) 738 WP_021723055.1 metal ABC transporter ATP-binding protein -
  LLA12_RS11705 (LLA12_02482) - 2379753..2380595 (-) 843 WP_068872849.1 metal ABC transporter substrate-binding protein -
  LLA12_RS11710 (LLA12_02483) - 2380592..2381029 (-) 438 WP_021721874.1 zinc-dependent MarR family transcriptional regulator -
  LLA12_RS11715 (LLA12_02484) comGG 2381110..2381385 (-) 276 WP_021721873.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 91 a.a.        Molecular weight: 10539.79 Da        Isoelectric Point: 5.6623

>NTDB_id=1144886 LLA12_RS11715 WP_021721873.1 2381110..2381385(-) (comGG) [Lactococcus lactis subsp. lactis strain A12]
MFLQFYLQRQIDDARQLRSEKEQLTAELMVSVALKTDLKSQGQIHFDSGDLFYNLLTDSSASSKTTDHLSDEKTYQFSIR
LKDGTNFQIKN

Nucleotide


Download         Length: 276 bp        

>NTDB_id=1144886 LLA12_RS11715 WP_021721873.1 2381110..2381385(-) (comGG) [Lactococcus lactis subsp. lactis strain A12]
ATGTTTCTTCAGTTCTATTTGCAAAGACAAATAGATGATGCTCGACAATTAAGAAGTGAAAAGGAGCAGTTAACTGCTGA
ATTAATGGTGTCAGTAGCTTTAAAGACTGACTTAAAATCTCAAGGGCAAATTCATTTTGATTCAGGAGATTTGTTCTACA
ATTTACTGACAGACTCGTCAGCCAGTTCAAAAACTACTGATCATTTAAGCGATGAAAAAACTTATCAATTTAGTATCCGC
CTAAAAGATGGCACAAACTTTCAAATAAAAAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Lactococcus lactis subsp. cremoris KW2

61.111

98.901

0.604

Multiple sequence alignment