Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   BN8422_RS11235 Genome accession   NZ_LT598688
Coordinates   2153558..2154274 (+) Length   238 a.a.
NCBI ID   WP_000688492.1    Uniprot ID   A0A7U7IEW1
Organism   Staphylococcus aureus isolate Sa_Newman_UoM     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2148558..2159274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BN8422_RS11205 - 2148777..2149403 (+) 627 WP_000522384.1 nitroreductase family protein -
  BN8422_RS11210 - 2149764..2150549 (+) 786 WP_000867960.1 carbon-nitrogen family hydrolase -
  BN8422_RS16020 hld 2151146..2151226 (-) 81 WP_000046022.1 delta-hemolysin -
  BN8422_RS11220 agrB 2151516..2152085 (+) 570 WP_001105707.1 accessory gene regulator AgrB -
  BN8422_RS11225 agrD 2152082..2152222 (+) 141 WP_001093929.1 cyclic lactone autoinducer peptide AgrD -
  BN8422_RS11230 agrC 2152247..2153539 (+) 1293 WP_001554031.1 quorum-sensing sensor histidine kinase AgrC -
  BN8422_RS11235 agrA 2153558..2154274 (+) 717 WP_000688492.1 quorum-sensing response regulator AgrA Regulator
  BN8422_RS11240 - 2154346..2154453 (+) 108 WP_001790167.1 hypothetical protein -
  BN8422_RS11245 - 2154641..2155600 (-) 960 WP_001253312.1 carbohydrate kinase family protein -
  BN8422_RS11250 - 2155597..2157081 (-) 1485 WP_000141414.1 sucrose-6-phosphate hydrolase -
  BN8422_RS11255 - 2157230..2158180 (-) 951 WP_000790330.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27905.90 Da        Isoelectric Point: 6.0927

>NTDB_id=1144840 BN8422_RS11235 WP_000688492.1 2153558..2154274(+) (agrA) [Staphylococcus aureus isolate Sa_Newman_UoM]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1144840 BN8422_RS11235 WP_000688492.1 2153558..2154274(+) (agrA) [Staphylococcus aureus isolate Sa_Newman_UoM]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACCTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCTGAATTAAGAACTCGAATTATAGACTGTTTAGAAACTGCACATACACGCTTACAATTGT
TGTCTAAAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IEW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

100

100

1

Multiple sequence alignment