Detailed information    

insolico Bioinformatically predicted

Overview


Name   lqsT   Type   Regulator
Locus tag   LPM7613_RS11895 Genome accession   NZ_LT598657
Coordinates   2686219..2687481 (+) Length   420 a.a.
NCBI ID   WP_010948208.1    Uniprot ID   Q5ZSL1
Organism   Legionella pneumophila strain Lpm7613 isolate Lpm7613     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 2681219..2692481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPM7613_RS11880 - 2681477..2681797 (-) 321 WP_010948205.1 hypothetical protein -
  LPM7613_RS11885 ceg32 2682105..2684933 (+) 2829 WP_010948206.1 Dot/Icm T4SS effector Ceg32/SidI -
  LPM7613_RS11890 mesI 2684935..2685822 (+) 888 WP_010948207.1 Dot/Icm T4SS metaeffector MesI -
  LPM7613_RS11895 lqsT 2686219..2687481 (+) 1263 WP_010948208.1 sensor histidine kinase Regulator
  LPM7613_RS11900 - 2687529..2688224 (-) 696 WP_010948209.1 iron-containing redox enzyme family protein -
  LPM7613_RS11905 sdjA 2688623..2691046 (-) 2424 WP_010948210.1 Dot/Icm T4SS effector SdjA -
  LPM7613_RS11910 dupB 2691117..2692310 (-) 1194 WP_010948211.1 Dot/Icm T4SS effector deubiquitinase DupB/LaiF -

Sequence


Protein


Download         Length: 420 a.a.        Molecular weight: 48657.07 Da        Isoelectric Point: 7.9744

>NTDB_id=1144757 LPM7613_RS11895 WP_010948208.1 2686219..2687481(+) (lqsT) [Legionella pneumophila strain Lpm7613 isolate Lpm7613]
MQRLKNIFTAIYQYLLKETEDASHQITLFGIVMMINYPLFGVFWKLEHFQLTEEFILRITAALLCACLAFNQFWPRQLLK
FLPVFWYIVLLFCLPYFFAYLTLINNGSTLWLMNCVSAIFFLLLVSSVLGALILLISGVGLAFFHFYILSNNQFVYIPGT
ISLFSLIVTFIAAIIIGALFARDREITYAGRLSGMRMLAGSIAHDLRTPLASIYLQAELQELIVERLNNPEVQKDLKENL
SKITRGIEMSNQLIRMQLNNIQRDKLDTSTFSIYSIKKLLKASLEEYPFKENQKSLIHLNDKNDFSIWIDEVGFKNMMWN
LLKNSLEYIEETHKGEISIWLEQGWEKENFNYLHIKDTAKGLNHKEYEKIFDFFYSGRKEGTGLGLAYCKLLMQAAGGDI
SCKGKKNEFAHFTLKFPKID

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=1144757 LPM7613_RS11895 WP_010948208.1 2686219..2687481(+) (lqsT) [Legionella pneumophila strain Lpm7613 isolate Lpm7613]
ATGCAAAGGTTAAAAAATATATTTACTGCAATTTACCAATATTTATTAAAAGAAACTGAAGATGCAAGCCACCAAATCAC
TTTATTTGGCATCGTCATGATGATTAATTACCCTCTTTTCGGAGTTTTCTGGAAACTGGAGCATTTTCAACTGACAGAAG
AATTTATTTTACGCATCACTGCAGCCCTCCTCTGTGCCTGTTTGGCATTTAATCAATTTTGGCCAAGACAATTATTAAAA
TTTCTACCTGTTTTTTGGTATATAGTTCTTCTCTTTTGTTTGCCTTACTTTTTTGCTTATTTGACTCTCATAAACAATGG
CTCGACTCTTTGGCTAATGAATTGCGTATCCGCTATCTTTTTTCTTTTATTAGTTTCCAGTGTATTGGGGGCTCTTATAT
TACTTATATCAGGTGTTGGACTTGCTTTTTTTCATTTTTATATTTTATCAAATAATCAGTTTGTCTATATCCCAGGAACC
ATATCACTTTTTAGTTTAATTGTTACGTTTATTGCAGCAATAATCATTGGTGCCTTGTTTGCACGAGATAGAGAAATTAC
CTATGCCGGACGTTTATCGGGTATGCGCATGCTGGCTGGAAGTATCGCTCATGATTTAAGAACGCCGCTTGCCAGTATTT
ATTTACAAGCCGAATTACAGGAATTGATTGTCGAAAGATTAAATAATCCAGAAGTTCAAAAGGACCTGAAGGAAAATTTA
AGCAAAATTACTCGCGGCATAGAAATGAGTAATCAATTAATTCGTATGCAATTAAATAATATTCAACGAGACAAATTAGA
TACCAGTACATTTTCGATTTATTCCATCAAAAAATTGCTCAAGGCGTCTTTAGAAGAATACCCTTTCAAAGAAAATCAAA
AATCATTGATTCATTTAAATGATAAAAATGATTTTTCCATATGGATTGATGAAGTGGGTTTTAAAAATATGATGTGGAAT
TTGCTAAAAAATAGTCTGGAATATATTGAGGAAACCCATAAAGGCGAAATCTCTATCTGGCTAGAACAAGGATGGGAGAA
AGAGAATTTTAATTACCTCCATATAAAAGATACAGCTAAAGGTTTAAATCATAAAGAATATGAAAAAATATTTGATTTCT
TCTATTCTGGCAGAAAAGAAGGAACTGGTTTAGGCTTGGCCTATTGTAAACTTCTGATGCAAGCAGCAGGCGGTGATATT
TCCTGTAAAGGGAAAAAAAATGAATTCGCTCATTTCACTTTAAAATTCCCCAAAATTGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q5ZSL1

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lqsT Legionella pneumophila subsp. pneumophila str. Philadelphia 1

100

100

1


Multiple sequence alignment