Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RL465_RS09340 Genome accession   NZ_LT594504
Coordinates   1935881..1936510 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate E. coli RL465     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1930881..1941510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RL465_RS09320 ycbZ 1931270..1933030 (-) 1761 WP_000156526.1 Lon protease family protein -
  RL465_RS09325 matP 1933216..1933668 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  RL465_RS09330 ompA 1933744..1934796 (-) 1053 WP_001361736.1 porin OmpA -
  RL465_RS09335 sulA 1935153..1935662 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  RL465_RS09340 sxy/tfoX 1935881..1936510 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  RL465_RS09345 yccS 1936473..1938635 (-) 2163 WP_000875023.1 YccS family putative transporter -
  RL465_RS09350 yccF 1938645..1939091 (-) 447 WP_001261235.1 YccF domain-containing protein -
  RL465_RS09355 helD 1939214..1941268 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1144677 RL465_RS09340 WP_000839153.1 1935881..1936510(+) (sxy/tfoX) [Escherichia coli isolate E. coli RL465]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1144677 RL465_RS09340 WP_000839153.1 1935881..1936510(+) (sxy/tfoX) [Escherichia coli isolate E. coli RL465]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment