Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   C7S01_RS03100 Genome accession   NZ_LT592155
Coordinates   519655..520263 (+) Length   202 a.a.
NCBI ID   WP_003690900.1    Uniprot ID   A0AB74EBN2
Organism   Neisseria gonorrhoeae strain WHO_X     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 514655..525263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7S01_RS03065 (WHOX_00549C) - 514974..515555 (-) 582 WP_003690895.1 superoxide dismutase -
  C7S01_RS03075 (WHOX_00550) dnaB 515719..517125 (+) 1407 WP_003690896.1 replicative DNA helicase -
  C7S01_RS03085 (WHOX_00551) pilH 517433..518098 (+) 666 WP_003690897.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  C7S01_RS03090 (WHOX_00552) pilI 518130..518738 (+) 609 WP_003690898.1 type IV pilus modification protein PilV Machinery gene
  C7S01_RS03095 (WHOX_00553) pilJ 518735..519676 (+) 942 WP_003690899.1 PilW family protein Machinery gene
  C7S01_RS03100 (WHOX_00554) pilK 519655..520263 (+) 609 WP_003690900.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  C7S01_RS03105 (WHOX_00555) pilL 520265..520738 (+) 474 WP_025455782.1 PilX family type IV pilin Machinery gene
  C7S01_RS03120 (WHOX_00556C) - 521350..521795 (-) 446 Protein_523 AzlC family ABC transporter permease -
  C7S01_RS03125 (WHOX_00557) dut 521961..522413 (+) 453 WP_003690909.1 dUTP diphosphatase -
  C7S01_RS03130 (WHOX_00558) dapC 522491..523678 (+) 1188 WP_003690911.1 succinyldiaminopimelate transaminase -
  C7S01_RS03135 (WHOX_00559) yaaA 523834..524613 (+) 780 WP_003690913.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22023.05 Da        Isoelectric Point: 7.5810

>NTDB_id=1144397 C7S01_RS03100 WP_003690900.1 519655..520263(+) (pilK) [Neisseria gonorrhoeae strain WHO_X]
MRKQNALTGIPTSEGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCENGLCTAVNVRTNDANEETFDNIVVKGKPTVEAVKRPCPAKSGKNSAGLCIDNKGMEYNKGVAGVSKMPR
YIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=1144397 C7S01_RS03100 WP_003690900.1 519655..520263(+) (pilK) [Neisseria gonorrhoeae strain WHO_X]
ATGCGCAAACAGAACGCTTTGACAGGAATCCCGACTTCTGAGGGACAGAGGGGGTTCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAACGGCCTGTGTACCGCAGTGAATGTACGGACAAATGATGCTAATGA
AGAGACTTTTGACAATATCGTGGTGAAAGGCAAGCCTACCGTTGAGGCCGTGAAGCGTCCTTGCCCTGCAAAGTCTGGCA
AAAATTCTGCCGGTCTGTGCATTGACAATAAAGGGATGGAATATAATAAAGGCGTGGCAGGCGTCAGCAAAATGCCGCGC
TATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAA
TACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-197)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

89.163

100

0.896

Multiple sequence alignment