Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilP   Type   Machinery gene
Locus tag   C7R98_RS00670 Genome accession   NZ_LT591904
Coordinates   105181..105726 (-) Length   181 a.a.
NCBI ID   WP_003687351.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO M     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 100181..110726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7R98_RS00645 (WHOM_00098C) - 101187..101699 (-) 513 WP_003687349.1 shikimate kinase -
  C7R98_RS00665 (WHOM_00100C) pilQ 102967..105162 (-) 2196 WP_003687350.1 type IV pilus secretin PilQ Machinery gene
  C7R98_RS00670 (WHOM_00101C) pilP 105181..105726 (-) 546 WP_003687351.1 pilus assembly protein PilP Machinery gene
  C7R98_RS00675 (WHOM_00102C) - 105744..106391 (-) 648 WP_003690570.1 type 4a pilus biogenesis protein PilO -
  C7R98_RS00680 (WHOM_00103C) pilN 106392..106991 (-) 600 WP_003687354.1 PilN domain-containing protein Machinery gene
  C7R98_RS00685 (WHOM_00104C) pilM 106994..108109 (-) 1116 WP_003687356.1 type IV pilus biogenesis protein PilM -
  C7R98_RS00690 (WHOM_00105) - 108261..110657 (+) 2397 WP_003690571.1 penicillin-binding protein 1A -

Sequence


Protein


Download         Length: 181 a.a.        Molecular weight: 20067.60 Da        Isoelectric Point: 4.7529

>NTDB_id=1144096 C7R98_RS00670 WP_003687351.1 105181..105726(-) (pilP) [Neisseria gonorrhoeae strain WHO M]
MKHYALLISFLALSACSQSSEDLNEWMAQTRREAKAEIIPFQAPTLPVAPVYSPPQLTGPNAFDFRRMETAKKGENAPDT
KRIKETLEKFSLENMRYVGILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIILNELIEDSTGNWVSRKAE
LLLNSSDKNTEQAAAPAAEQN

Nucleotide


Download         Length: 546 bp        

>NTDB_id=1144096 C7R98_RS00670 WP_003687351.1 105181..105726(-) (pilP) [Neisseria gonorrhoeae strain WHO M]
ATGAAACACTATGCCTTACTCATCAGCTTTCTGGCTCTCTCCGCGTGTTCCCAAAGTTCTGAAGACCTAAACGAATGGAT
GGCACAAACGCGACGCGAAGCCAAAGCAGAAATCATACCTTTCCAAGCACCTACCCTGCCGGTTGCGCCGGTATACAGCC
CGCCGCAGCTTACAGGGCCGAACGCATTCGACTTCCGCCGCATGGAAACCGCCAAAAAAGGGGAAAATGCCCCCGACACC
AAGCGTATTAAAGAAACGCTGGAAAAATTCAGTTTGGAAAATATGCGTTATGTCGGCATTTTGAAGTCCGGACAGAAAGT
CTCCGGCTTCATCGAGGCTGAAGGTTATGTCTACACTGTCGGTGTCGGCAACTATTTGGGACAAAACTACGGTAGAATCG
AAAGCATTACCGACGACAGCATCATCCTGAACGAGCTGATAGAAGACAGCACGGGCAACTGGGTTTCCCGTAAAGCAGAA
CTGCTGTTGAATTCTTCCGACAAAAACACCGAACAAGCGGCAGCACCTGCCGCAGAACAAAATTAA

Domains


Predicted by InterproScan.

(22-163)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

98.343

100

0.983


Multiple sequence alignment