Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C7S00_RS14205 Genome accession   NZ_LT591901
Coordinates   1619068..1619193 (+) Length   41 a.a.
NCBI ID   WP_332069857.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO L     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1614068..1624193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7S00_RS09450 (WHOL_01767C) - 1614764..1615213 (-) 450 WP_003692085.1 CopD family copper resistance protein -
  C7S00_RS09455 (WHOL_01768C) waaA 1615254..1616525 (-) 1272 WP_010360974.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  C7S00_RS09460 (WHOL_01769C) gnd 1616588..1618036 (-) 1449 WP_003688061.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase -
  C7S00_RS09465 (WHOL_01770C) - 1618116..1618379 (-) 264 WP_017147189.1 hypothetical protein -
  C7S00_RS14205 (WHOL_01771) pilC 1619068..1619193 (+) 126 WP_332069857.1 hypothetical protein Machinery gene
  C7S00_RS09470 (WHOL_01772) pilC 1619190..1622222 (+) 3033 WP_332069858.1 PilC family type IV pilus tip adhesin Machinery gene
  C7S00_RS09485 (WHOL_01773) - 1623219..1623503 (+) 285 WP_003692093.1 GIY-YIG nuclease family protein -

Sequence

Protein


Download         Length: 41 a.a.        Molecular weight: 4727.63 Da        Isoelectric Point: 12.9055

>NTDB_id=1144093 C7S00_RS14205 WP_332069857.1 1619068..1619193(+) (pilC) [Neisseria gonorrhoeae strain WHO L]
MNKTLKRQVFRHTALYAAILMFSHTGGGGGRRRRKRINTLL

Nucleotide


Download         Length: 126 bp        

>NTDB_id=1144093 C7S00_RS14205 WP_332069857.1 1619068..1619193(+) (pilC) [Neisseria gonorrhoeae strain WHO L]
ATGAATAAAACTTTGAAACGGCAGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGG
GGGGGGGGGCAGGCGCAGGCGCAAACGTATAAATACGCTATTGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

96.667

73.171

0.707

Multiple sequence alignment