Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   T479_RS13575 Genome accession   NZ_CP006837
Coordinates   2843322..2845013 (-) Length   563 a.a.
NCBI ID   WP_024361171.1    Uniprot ID   A0A2S0JZB3
Organism   Lysinibacillus varians strain GY32     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2838322..2850013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  T479_RS13550 (T479_14185) - 2839366..2839566 (-) 201 WP_024361162.1 hypothetical protein -
  T479_RS13555 (T479_14190) - 2839649..2840026 (-) 378 WP_024361163.1 PH domain-containing protein -
  T479_RS13560 (T479_14195) - 2840176..2840814 (-) 639 WP_025219920.1 NAD(P)-dependent oxidoreductase -
  T479_RS13565 (T479_14200) spo0A 2841100..2841891 (-) 792 WP_024361169.1 sporulation transcription factor Spo0A -
  T479_RS13570 (T479_14205) - 2842247..2843194 (-) 948 WP_024361170.1 SpoIVB peptidase S55 domain-containing protein -
  T479_RS13575 (T479_14210) recN 2843322..2845013 (-) 1692 WP_024361171.1 DNA repair protein RecN Machinery gene
  T479_RS13580 (T479_14215) ahrC 2845131..2845580 (-) 450 WP_024361172.1 transcriptional regulator AhrC/ArgR -
  T479_RS13585 (T479_14220) - 2845682..2846500 (-) 819 WP_025219921.1 TlyA family RNA methyltransferase -
  T479_RS13590 (T479_14225) dxs 2846500..2848401 (-) 1902 WP_024361174.1 1-deoxy-D-xylulose-5-phosphate synthase -
  T479_RS13595 (T479_14230) - 2848565..2849446 (-) 882 WP_024361175.1 polyprenyl synthetase family protein -
  T479_RS13600 (T479_14235) xseB 2849452..2849685 (-) 234 WP_024361176.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63353.14 Da        Isoelectric Point: 4.6686

>NTDB_id=114385 T479_RS13575 WP_024361171.1 2843322..2845013(-) (recN) [Lysinibacillus varians strain GY32]
MLRELSIRNFAIIEDLTVSFSDGLTVLTGETGAGKSIIIDAVHLLAGGRGNSEFIRHGAKKAELGGLFQISSTAHPVYKK
LEEAGIEIEEDSIILRRDLNDSGKSVCRVNGKLVPLSVLRDIGASLIDIHGQHENQELMDEKQHIHLLDQFAEEQLSPIL
EQYSIQYNEYRALKKELATISIDEQLMAQRIDLYQFQMKELEDANLKLGEEDELLDERRRLMNFNKIFERSSAAYEAIQG
ETKGLDWIGTAMGALDDAAVIDEQFKEASESVTTAFYALQDAAYQVKNVLDELEFDPARLNEVEQRLALFQNLKRKYGST
VEEMLAYYEKIKTELSELLNRDEILQLKERKVLEMEVVLSEFAEKLSHVRKAAANDLSEAIMAELRELHMEKAKFIVNFD
ALPYFDVNGKDQVIFYISTNVGEPPKSLPKIASGGELSRMMLALKTIFSSSNGVTSIIFDEVDTGVSGRVAQAIAEKIAA
ISVNSQVLCISHLPQVAAMADHHYFIKKEVEHDRTFTSLAEIDTDARIEEVSRMMSGAEITDLTLQHATELLKMANERKK
QMR

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=114385 T479_RS13575 WP_024361171.1 2843322..2845013(-) (recN) [Lysinibacillus varians strain GY32]
GTGTTAAGAGAGCTTAGTATTCGAAATTTTGCCATCATCGAGGATTTAACGGTTAGTTTTTCGGATGGTTTAACTGTACT
AACAGGAGAAACTGGTGCTGGGAAATCCATTATTATTGATGCGGTACATTTACTTGCTGGTGGTAGAGGCAATTCAGAAT
TTATTCGTCATGGTGCTAAAAAAGCAGAGTTAGGCGGGTTGTTTCAAATTTCAAGCACTGCACATCCTGTATATAAGAAA
TTGGAGGAAGCAGGCATTGAAATAGAAGAAGATTCTATTATTTTACGCCGCGATTTAAATGACTCTGGTAAAAGTGTTTG
TCGGGTAAATGGCAAATTGGTCCCTTTATCGGTTTTACGAGATATTGGTGCAAGTTTAATTGATATACATGGTCAGCATG
AAAATCAAGAACTAATGGATGAAAAACAACATATTCATTTATTGGATCAATTTGCAGAAGAGCAACTATCACCGATTCTT
GAACAATATAGTATTCAATATAACGAATATCGGGCATTAAAAAAAGAATTAGCCACCATTTCTATTGATGAGCAGTTAAT
GGCGCAACGCATTGATTTGTACCAATTCCAAATGAAAGAATTGGAAGATGCAAATTTAAAGCTTGGTGAAGAAGATGAGC
TGTTAGATGAACGTCGTCGTCTAATGAATTTTAATAAAATTTTCGAACGCTCGAGTGCTGCCTATGAAGCAATTCAGGGG
GAGACAAAAGGGCTTGACTGGATCGGTACAGCGATGGGCGCATTAGATGATGCGGCGGTCATCGATGAACAGTTTAAAGA
GGCATCTGAGTCGGTAACAACTGCTTTTTACGCTTTACAGGATGCCGCCTATCAGGTAAAAAATGTATTAGATGAGTTAG
AATTTGATCCTGCGCGATTAAATGAAGTGGAGCAACGCTTGGCACTTTTCCAAAACTTAAAGCGCAAATATGGCTCCACT
GTTGAAGAAATGCTCGCCTATTATGAGAAGATTAAAACAGAGCTTAGTGAGCTTTTGAATCGTGATGAAATATTGCAATT
AAAAGAACGAAAAGTACTTGAAATGGAAGTAGTATTAAGTGAATTTGCTGAAAAACTTTCGCATGTTCGAAAAGCAGCAG
CCAATGATTTAAGCGAGGCTATTATGGCAGAGCTACGTGAATTACATATGGAAAAAGCAAAGTTTATTGTAAATTTTGAT
GCTTTACCTTACTTTGATGTCAATGGTAAAGACCAAGTGATCTTTTATATTTCAACGAATGTCGGGGAACCACCGAAATC
TTTACCGAAAATTGCTTCAGGTGGGGAATTGTCGCGTATGATGTTAGCATTAAAAACGATTTTTTCTTCTTCCAATGGTG
TAACATCCATTATTTTTGACGAAGTGGATACTGGCGTAAGCGGTCGTGTAGCGCAAGCAATCGCTGAAAAAATTGCAGCC
ATTTCTGTTAATTCTCAAGTTTTGTGTATTTCGCATTTACCTCAAGTGGCGGCGATGGCTGACCATCATTACTTCATTAA
AAAAGAGGTTGAACATGATCGGACATTTACTTCTTTAGCAGAAATCGATACAGATGCTCGTATTGAAGAAGTGAGCAGAA
TGATGTCAGGTGCAGAAATTACCGATTTAACTTTACAGCATGCGACAGAATTGTTAAAGATGGCAAACGAACGAAAAAAA
CAAATGCGCTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S0JZB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.778

100

0.54

Multiple sequence alignment