Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilA   Type   Machinery gene
Locus tag   A8Q77_RS09170 Genome accession   NZ_LT571436
Coordinates   1973842..1975140 (-) Length   432 a.a.
NCBI ID   WP_004285177.1    Uniprot ID   A0A448VNN0
Organism   Neisseria weaveri strain NCTC13585     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1968842..1980140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8Q77_RS09145 (SAMEA3174300_01837) - 1970100..1970996 (-) 897 WP_064130913.1 patatin-like phospholipase family protein -
  A8Q77_RS09150 (SAMEA3174300_01838) pncC 1971142..1971612 (-) 471 WP_004285182.1 nicotinamide-nucleotide amidase -
  A8Q77_RS09155 (SAMEA3174300_01839) ftsX 1971714..1972628 (-) 915 WP_004285181.1 permease-like cell division protein FtsX -
  A8Q77_RS09160 (SAMEA3174300_01840) ftsE 1972625..1973278 (-) 654 WP_036494579.1 cell division ATP-binding protein FtsE -
  A8Q77_RS09165 (SAMEA3174300_01841) - 1973506..1973757 (+) 252 WP_004285757.1 BolA family protein -
  A8Q77_RS09170 (SAMEA3174300_01842) pilA 1973842..1975140 (-) 1299 WP_004285177.1 signal recognition particle-docking protein FtsY Machinery gene
  A8Q77_RS09175 (SAMEA3174300_01843) - 1975397..1976722 (+) 1326 WP_064130914.1 M16 family metallopeptidase -
  A8Q77_RS09180 (SAMEA3174300_01844) - 1976784..1978103 (+) 1320 WP_004285174.1 M16 family metallopeptidase -
  A8Q77_RS09185 (SAMEA3174300_01845) - 1978180..1978614 (+) 435 WP_004285173.1 YiiD C-terminal domain-containing protein -

Sequence


Protein


Download         Length: 432 a.a.        Molecular weight: 45785.88 Da        Isoelectric Point: 4.5051

>NTDB_id=1143814 A8Q77_RS09170 WP_004285177.1 1973842..1975140(-) (pilA) [Neisseria weaveri strain NCTC13585]
MFSFFKRKKKQETPEEITPEAAPSAVETAAEPQPETEPAESAAPKKSEPNPIADAISEPASPAVQQPVATPETAAEIPAA
TAAMPNETENEPQAEAAVEEDHTSDTASVPAVPAVKEEPKPEPAKLGWAARLKQGLTKSRDHMAKSLAGVFGGGQIDEDL
YEELETVLITSDMGMEATDYLMKDVRKRVSLRGLKDGNELRGALKDAIYDLIKPLEQPLVIPDNGQPFVIMLAGINGAGK
TTSIGKLAKYFQSQGKSVLLAAGDTFRAAAREQLQEWGARNGVTVISQSTGDSAAVCFDAVEAAKARGIDIVLADTAGRL
PTQLHLMEEIKKVKRVLQKSMPDAPHEIIVVLDANIGQNAVNQVVAFDDALGLTGLIVTKLDGTAKGGILAALASSRPIP
VRYIGVGESIDDLRPFDARAFVDALIDDGQGS

Nucleotide


Download         Length: 1299 bp        

>NTDB_id=1143814 A8Q77_RS09170 WP_004285177.1 1973842..1975140(-) (pilA) [Neisseria weaveri strain NCTC13585]
ATGTTCAGCTTCTTTAAACGCAAGAAAAAACAAGAAACGCCGGAAGAAATCACACCGGAAGCCGCACCGTCGGCCGTAGA
AACCGCAGCAGAGCCGCAGCCGGAAACCGAACCGGCGGAAAGCGCCGCGCCAAAAAAGTCCGAGCCAAACCCCATTGCCG
ACGCTATATCTGAACCGGCTTCCCCGGCCGTTCAACAGCCCGTTGCCACTCCCGAAACCGCTGCCGAAATCCCCGCTGCA
ACGGCTGCCATGCCCAATGAAACCGAAAACGAACCGCAAGCCGAAGCTGCCGTTGAAGAAGATCATACTTCCGACACCGC
TTCCGTACCTGCCGTTCCCGCCGTGAAGGAAGAACCCAAACCCGAGCCGGCCAAACTCGGCTGGGCTGCACGTTTGAAAC
AAGGTCTGACCAAATCGCGCGACCATATGGCCAAATCGCTGGCCGGCGTATTCGGCGGCGGCCAAATCGACGAAGACCTG
TATGAAGAATTGGAAACCGTGCTGATTACCAGTGATATGGGCATGGAAGCCACCGATTATCTGATGAAAGACGTACGCAA
ACGCGTATCGCTGCGCGGTTTGAAAGACGGCAACGAGCTGCGCGGCGCGTTGAAAGATGCGATTTACGATTTAATCAAAC
CGCTTGAACAGCCGCTGGTGATTCCTGATAACGGCCAGCCGTTTGTGATTATGCTGGCCGGCATCAACGGCGCGGGCAAA
ACCACTTCCATCGGCAAACTGGCCAAATATTTCCAATCGCAAGGCAAGTCGGTATTGTTGGCCGCAGGCGATACCTTCCG
CGCCGCTGCACGCGAGCAGTTGCAGGAATGGGGCGCGCGCAACGGCGTTACCGTGATTTCGCAAAGCACGGGCGACTCCG
CCGCCGTCTGCTTCGATGCCGTAGAAGCCGCTAAAGCGCGCGGTATAGACATCGTGCTGGCCGACACCGCAGGCCGCCTG
CCGACCCAGCTGCATTTGATGGAAGAAATCAAAAAAGTAAAGCGCGTGCTGCAAAAATCCATGCCCGACGCGCCGCATGA
AATCATCGTGGTGCTGGATGCCAATATCGGCCAAAACGCCGTCAACCAAGTGGTGGCGTTTGACGACGCACTCGGCCTGA
CCGGCCTGATCGTGACCAAGCTCGACGGTACGGCCAAAGGCGGCATTCTGGCTGCACTCGCTTCCAGCCGCCCGATTCCG
GTACGCTATATCGGTGTGGGCGAGAGCATCGACGACTTGCGTCCGTTTGACGCGCGTGCGTTTGTGGATGCACTGATCGA
CGACGGTCAGGGCAGCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A448VNN0

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

72.706

100

0.734


Multiple sequence alignment