Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   A8Q77_RS04295 Genome accession   NZ_LT571436
Coordinates   934567..937767 (-) Length   1066 a.a.
NCBI ID   WP_050809986.1    Uniprot ID   -
Organism   Neisseria weaveri strain NCTC13585     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 929567..942767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8Q77_RS04260 (SAMEA3174300_00847) - 929884..930153 (-) 270 WP_064130541.1 hypothetical protein -
  A8Q77_RS04265 (SAMEA3174300_00848) - 930196..930390 (+) 195 WP_036494370.1 hypothetical protein -
  A8Q77_RS04270 (SAMEA3174300_00849) - 930712..931191 (-) 480 WP_004284067.1 DUF3465 domain-containing protein -
  A8Q77_RS04275 (SAMEA3174300_00850) - 931242..932042 (-) 801 WP_004284068.1 hypothetical protein -
  A8Q77_RS04280 (SAMEA3174300_00851) - 932148..932399 (+) 252 WP_004284069.1 NGO1151 family protein -
  A8Q77_RS04285 (SAMEA3174300_00852) - 932502..933290 (+) 789 WP_004285521.1 basic amino acid ABC transporter substrate-binding protein -
  A8Q77_RS04290 (SAMEA3174300_00853) - 933504..934457 (+) 954 WP_004285522.1 nucleoside hydrolase -
  A8Q77_RS04295 (SAMEA3174300_00854) recC 934567..937767 (-) 3201 WP_050809986.1 exodeoxyribonuclease V subunit gamma Machinery gene
  A8Q77_RS04300 (SAMEA3174300_00855) rpe 937906..938589 (-) 684 WP_172795931.1 ribulose-phosphate 3-epimerase -
  A8Q77_RS04305 (SAMEA3174300_00856) - 938998..939282 (+) 285 WP_004284077.1 hypothetical protein -
  A8Q77_RS04310 (SAMEA3174300_00857) - 939420..941045 (+) 1626 WP_004284078.1 CTP synthase -
  A8Q77_RS04315 (SAMEA3174300_00858) - 941388..941753 (+) 366 WP_004284080.1 YkvA family protein -
  A8Q77_RS04320 (SAMEA3174300_00859) - 941893..942753 (+) 861 WP_004285524.1 YgfZ/GcvT domain-containing protein -

Sequence

Protein


Download         Length: 1066 a.a.        Molecular weight: 121076.16 Da        Isoelectric Point: 4.7607

>NTDB_id=1143796 A8Q77_RS04295 WP_050809986.1 934567..937767(-) (recC) [Neisseria weaveri strain NCTC13585]
MLYLHQSNRLEVLAGIFAQLQSLLPLDDPFASEEVVVQSQGMRRYLNAYLARRLGVAANLKFSLPAGLAWRLMRDFIPGV
PALSPFSADVVVWRLLDLFGSSRFKDDAQFEPVRAALSEYLGNGDAAAYQLAAQLADVFDQYLVYRPQWIDAWQQGKLVG
LGEDEAWQAALWRFLGDGMQGVPHRVALWQQLLGALSADKLPERFFVFGVAAMAPMYLQLLQAVAQHCDVHILALNPSSG
YWGDVIDAAQILKNKGDIDLSQSGHPLLASLGKQGRDFFDALSEMPDVEERGYYDDVESGSLLRRLQYQIQTLQMPSENF
TENGLEDGSIQVCSAHSPLRELQVLKTKLLRVLNEHPDWQPHDIAVLMPDIQPYMPYIEVVFGQEQDGAQKLPYSVSDVK
VSRRQPLFYVLEQVFDLLQSRFEADKLLPLLDSHLVLARFNLSREDLPLLMDTVTQLNIHWGVDKAMRGSDALFTWQQGL
DRLILGWMLPENGNGLWQGISAWHGDVNHLAVFEGFAEFIRVLSDTFKEWAQPAEVPVWIERIRKLIQDLTMPDADSQYA
VQQLEQSLARWQEETVLAGFTGILSQETVIRHVEHFLGSESQAGFLRGGITFCSMVPMRNLPFKMICLLGLNDGDFPRNT
KAAAFDLIAKYPQKGDRSRRDDDRYLFLEAIISAREILYLSYLGKNIENNNDKAPSALLAELIDTIAEMTGQEASVLSES
WVENHYLQPFSRNYFSKEADNKATQRSIRQDYAEALNRPSGEIPAFFNPDSFPKPEPIEEQMNITQSEFLSFWRNPVKAW
LRRTLGWSGMYTEQVWEAEEPFKPNCNAKIMARYIDARKNHADFTDVAEKLEAESFFPADKLGGLWQESFRLSALSLDAA
LVGSKKIPARAYRLQIGRFCLEGSLENVYENGQIIYLYQNLNAPQTIELMLEHLIFCAVRPSEIQTYATHIVQADCKVSD
YPEIDKDQAEAILQKWLEYYVWGQARPLPFFAKLSIEAAKTKIKDEKKAREGIVFEYQNGQSGKAPCEYDEVKLVFGRDK
ILPVSTPLFWNMIDDLLVTLVKLIGL

Nucleotide


Download         Length: 3201 bp        

>NTDB_id=1143796 A8Q77_RS04295 WP_050809986.1 934567..937767(-) (recC) [Neisseria weaveri strain NCTC13585]
ATGCTTTATCTGCACCAATCCAACCGACTCGAAGTATTGGCCGGTATTTTTGCGCAACTGCAGTCGCTGCTTCCTTTAGA
CGATCCTTTTGCTTCGGAGGAGGTGGTTGTTCAGAGTCAGGGAATGCGCCGGTATTTGAATGCGTATTTGGCCCGCCGTT
TGGGGGTGGCGGCGAATTTGAAATTCAGTTTGCCTGCAGGGTTGGCCTGGCGCTTGATGCGTGATTTTATTCCGGGTGTG
CCGGCGTTGAGTCCGTTTTCGGCAGATGTGGTGGTTTGGCGCTTGCTGGATTTATTTGGTAGCAGCAGGTTTAAAGACGA
TGCGCAATTCGAACCGGTTAGGGCGGCGTTGTCGGAGTATCTCGGCAACGGAGATGCCGCGGCCTACCAGCTGGCAGCAC
AGCTGGCGGATGTGTTTGACCAATATTTGGTTTACCGTCCGCAGTGGATTGATGCTTGGCAGCAGGGAAAATTGGTAGGC
TTGGGGGAGGATGAGGCTTGGCAGGCGGCTTTGTGGCGGTTTTTGGGTGACGGTATGCAGGGTGTGCCGCACCGTGTGGC
GTTGTGGCAACAGTTGTTGGGGGCGTTGTCTGCCGATAAGTTGCCGGAGCGTTTTTTTGTTTTCGGTGTGGCGGCAATGG
CACCGATGTATCTGCAGTTGTTGCAGGCGGTGGCGCAGCATTGCGATGTGCATATTTTGGCATTGAATCCCAGTAGTGGT
TATTGGGGGGATGTAATTGATGCGGCACAGATTTTAAAAAACAAAGGCGATATAGACTTGAGTCAGAGTGGTCATCCGCT
TTTGGCTTCTTTGGGTAAGCAGGGGCGGGATTTTTTTGATGCGCTGTCCGAGATGCCGGATGTGGAGGAGCGCGGATATT
ATGACGATGTAGAGAGCGGGAGTCTGCTTCGCCGCTTACAGTATCAGATTCAAACATTACAGATGCCGTCTGAAAATTTT
ACGGAAAACGGGTTGGAGGACGGCTCGATTCAAGTTTGTTCGGCGCACAGTCCTTTGCGTGAATTGCAGGTTTTGAAAAC
AAAATTATTGAGGGTGTTAAACGAACATCCTGACTGGCAACCGCATGATATCGCCGTTTTGATGCCGGATATCCAGCCCT
ATATGCCTTATATCGAAGTGGTGTTCGGACAGGAGCAGGACGGGGCGCAGAAGCTGCCTTATTCGGTTTCGGATGTTAAA
GTCAGCAGGCGGCAGCCTTTGTTTTATGTGTTGGAGCAGGTATTCGATCTGCTGCAAAGCCGTTTTGAAGCGGATAAGCT
ACTGCCTTTACTGGATAGCCATCTGGTGTTGGCACGTTTTAATCTTTCGCGTGAAGACTTGCCGCTGCTGATGGATACGG
TGACGCAGTTAAATATTCATTGGGGTGTAGATAAAGCCATGCGCGGCAGCGATGCTTTGTTTACCTGGCAGCAGGGTTTG
GATCGGCTGATTCTTGGTTGGATGCTGCCTGAAAACGGAAACGGTTTGTGGCAGGGCATCAGTGCATGGCATGGCGATGT
CAACCATTTGGCTGTGTTTGAAGGCTTTGCAGAGTTTATCCGGGTTTTATCGGATACCTTTAAAGAATGGGCGCAGCCTG
CAGAAGTGCCGGTTTGGATAGAGCGTATACGCAAGCTGATCCAAGATTTAACGATGCCGGATGCGGACAGCCAATATGCC
GTTCAGCAGCTGGAACAGTCTTTGGCGCGCTGGCAGGAAGAAACGGTATTGGCAGGCTTTACCGGCATATTGTCTCAGGA
AACAGTTATCCGTCATGTGGAACATTTTTTAGGTAGCGAGTCTCAAGCCGGTTTTTTGCGTGGTGGCATCACGTTTTGCA
GCATGGTACCGATGCGCAACCTGCCGTTTAAGATGATTTGCCTGTTGGGACTGAATGACGGCGATTTTCCAAGAAACACC
AAGGCCGCGGCTTTTGACCTGATTGCCAAGTATCCGCAAAAAGGCGACCGTTCACGCCGTGATGACGATCGCTATCTGTT
TTTGGAAGCCATTATTAGCGCAAGGGAAATTCTGTATTTGTCTTACTTAGGCAAGAATATTGAAAACAATAATGACAAAG
CCCCTTCTGCTTTATTGGCAGAGTTGATTGATACGATTGCCGAAATGACCGGGCAGGAAGCGTCGGTTTTGTCGGAATCG
TGGGTGGAAAACCATTATTTGCAGCCGTTTTCGAGAAACTATTTTTCAAAAGAAGCCGATAATAAAGCTACCCAAAGAAG
CATACGTCAGGATTATGCCGAAGCTTTGAACCGGCCGTCGGGAGAAATACCGGCTTTCTTCAATCCGGATTCATTTCCAA
AGCCGGAGCCGATTGAAGAGCAAATGAATATTACCCAATCCGAGTTTTTGTCTTTCTGGCGCAACCCGGTAAAAGCCTGG
CTGCGGCGGACGCTCGGTTGGAGCGGAATGTATACCGAGCAGGTATGGGAAGCGGAAGAGCCTTTTAAGCCGAACTGTAA
TGCGAAAATTATGGCCCGTTACATAGATGCTCGAAAAAATCATGCCGATTTTACGGATGTTGCTGAAAAGCTTGAGGCAG
AGAGCTTTTTCCCGGCCGATAAATTGGGCGGATTGTGGCAGGAAAGTTTTCGTCTTTCGGCTTTATCGCTCGATGCCGCA
TTGGTTGGCAGCAAAAAAATTCCGGCACGCGCATACCGTCTGCAAATAGGCCGTTTCTGTTTGGAAGGCAGTTTGGAAAA
TGTATATGAAAACGGCCAAATCATTTATCTGTATCAGAATTTAAATGCACCGCAAACCATAGAGTTGATGTTGGAACACT
TGATTTTCTGCGCCGTCAGGCCGTCTGAAATTCAAACGTATGCAACACATATTGTTCAGGCCGATTGCAAAGTATCGGAT
TATCCGGAAATCGACAAAGACCAGGCTGAGGCAATCCTGCAAAAGTGGCTTGAGTATTATGTTTGGGGGCAAGCGCGTCC
GTTGCCGTTTTTTGCCAAATTGAGTATCGAGGCCGCGAAAACCAAAATCAAAGACGAGAAAAAAGCACGGGAAGGCATAG
TGTTTGAGTATCAAAACGGTCAGAGCGGTAAAGCACCTTGCGAATATGACGAAGTTAAGCTGGTGTTCGGCAGAGACAAA
ATCTTGCCGGTCTCGACGCCGTTATTTTGGAATATGATTGATGACCTGCTGGTTACTCTTGTGAAGCTGATTGGGTTGTA
G

Domains

Predicted by InterproScan.

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-311)

RecC C-terminal domain (RecC_C)

(783-1001)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

56.955

99.812

0.568

Multiple sequence alignment