Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   A8Q77_RS03140 Genome accession   NZ_LT571436
Coordinates   682451..683011 (+) Length   186 a.a.
NCBI ID   WP_064130415.1    Uniprot ID   -
Organism   Neisseria weaveri strain NCTC13585     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 677451..688011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8Q77_RS03115 (SAMEA3174300_00619) - 677692..678273 (-) 582 WP_036494970.1 superoxide dismutase -
  A8Q77_RS03120 (SAMEA3174300_00620) dnaB 678442..679851 (+) 1410 WP_004283371.1 replicative DNA helicase -
  A8Q77_RS03125 (SAMEA3174300_00621) - 680021..680716 (+) 696 WP_004286322.1 GspH/FimT family pseudopilin -
  A8Q77_RS03130 (SAMEA3174300_00622) pilV 680764..681489 (+) 726 WP_004286323.1 type IV pilus modification protein PilV -
  A8Q77_RS03135 (SAMEA3174300_00623) - 681489..682472 (+) 984 WP_064130414.1 PilW family protein -
  A8Q77_RS03140 (SAMEA3174300_00624) pilK 682451..683011 (+) 561 WP_064130415.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  A8Q77_RS03145 (SAMEA3174300_00625) - 683013..683501 (+) 489 WP_004283366.1 type IV pilin protein -
  A8Q77_RS03150 (SAMEA3174300_00626) - 683589..684053 (-) 465 WP_081463189.1 low molecular weight protein-tyrosine-phosphatase -
  A8Q77_RS03155 (SAMEA3174300_00627) - 684053..685156 (-) 1104 WP_064131003.1 hypothetical protein -
  A8Q77_RS03160 (SAMEA3174300_00628) - 685370..686998 (+) 1629 WP_004283363.1 ABC-F family ATPase -
  A8Q77_RS10265 - 687238..687372 (+) 135 WP_004283362.1 DUF3149 domain-containing protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20703.75 Da        Isoelectric Point: 9.1508

>NTDB_id=1143792 A8Q77_RS03140 WP_064130415.1 682451..683011(+) (pilK) [Neisseria weaveri strain NCTC13585]
MRRTNILKTGRLKSKQQEQGFTLFIVMMVMIVVAFLVVAATQSYNTEQRISVNDADRKFALELAEAALREGENQIVDFED
VTFSADCQKGLCASAGSAAVVVNNLTIEAETGNTPAWKRMCGSKLCIETNGRIYETAAKFSSKKPRYIIEYIRTQDDGAV
IFRVTSRAWGRNKNTVVTLQSYVQVG

Nucleotide


Download         Length: 561 bp        

>NTDB_id=1143792 A8Q77_RS03140 WP_064130415.1 682451..683011(+) (pilK) [Neisseria weaveri strain NCTC13585]
ATGCGCAGAACGAACATTCTAAAAACAGGCCGTCTGAAATCCAAACAGCAAGAACAGGGGTTTACGCTGTTTATCGTGAT
GATGGTAATGATTGTGGTAGCGTTTTTGGTGGTTGCTGCTACACAGTCTTACAATACAGAGCAGCGTATTAGTGTGAACG
ATGCGGATAGAAAATTTGCTTTGGAATTGGCAGAAGCCGCATTACGCGAGGGAGAAAATCAAATTGTTGATTTTGAGGAC
GTAACATTCAGCGCGGATTGTCAAAAGGGTTTGTGTGCATCGGCAGGCTCCGCAGCAGTTGTTGTCAACAATCTGACGAT
TGAAGCAGAAACGGGGAATACTCCTGCCTGGAAGCGTATGTGTGGTTCCAAGCTTTGTATAGAAACCAATGGTAGAATAT
ATGAAACGGCAGCCAAATTTTCCAGCAAAAAGCCGCGTTACATTATTGAATATATTAGAACTCAGGACGACGGAGCGGTT
ATTTTCCGAGTAACTTCCAGAGCATGGGGAAGAAATAAAAATACGGTGGTAACACTCCAATCTTATGTTCAGGTAGGTTG
A

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(19-69)

Type IV pilus assembly protein PilX C-term (PilX)

(89-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

52.217

100

0.57

Multiple sequence alignment