Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | A6744_RS09135 | Genome accession | NZ_LT546645 |
| Coordinates | 1956931..1958175 (+) | Length | 414 a.a. |
| NCBI ID | WP_063492567.1 | Uniprot ID | - |
| Organism | Bordetella trematum strain H044680328 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1951931..1963175
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6744_RS09110 (SAMEA3906487_01850) | - | 1953804..1954190 (+) | 387 | WP_025513051.1 | MOSC N-terminal beta barrel domain-containing protein | - |
| A6744_RS09115 (SAMEA3906487_01851) | - | 1954197..1955387 (-) | 1191 | WP_038854468.1 | benzoate/H(+) symporter BenE family transporter | - |
| A6744_RS09120 (SAMEA3906487_01852) | - | 1955384..1955635 (-) | 252 | WP_033535489.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
| A6744_RS09125 (SAMEA3906487_01853) | coaD | 1955710..1956216 (-) | 507 | WP_025513049.1 | pantetheine-phosphate adenylyltransferase | - |
| A6744_RS09130 (SAMEA3906487_01854) | rsmD | 1956238..1956858 (-) | 621 | WP_082832965.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| A6744_RS09135 (SAMEA3906487_01855) | pilA | 1956931..1958175 (+) | 1245 | WP_063492567.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| A6744_RS09140 (SAMEA3906487_01856) | - | 1958437..1959063 (+) | 627 | WP_033535487.1 | glutathione S-transferase family protein | - |
| A6744_RS09145 (SAMEA3906487_01857) | - | 1959109..1960422 (+) | 1314 | WP_025513045.1 | MFS transporter | - |
| A6744_RS09150 (SAMEA3906487_01858) | - | 1960440..1961441 (-) | 1002 | WP_025513044.1 | AraC family transcriptional regulator | - |
| A6744_RS09155 (SAMEA3906487_01859) | - | 1961614..1962381 (+) | 768 | WP_025513043.1 | aldolase | - |
Sequence
Protein
Download Length: 414 a.a. Molecular weight: 42566.93 Da Isoelectric Point: 6.5200
>NTDB_id=1143724 A6744_RS09135 WP_063492567.1 1956931..1958175(+) (pilA) [Bordetella trematum strain H044680328]
MFRFFKKKTPAPAAPATPAPPPQEETIASPAPTPEAAPAAAPVAAPEAPAAQPPSTPPPAPVPEPAPVPAPSPVAPPSPV
PAPAAAPTAPVTPAAAAAEPAAEPQAAAAPKKASWLSRLKQGLARTGQSIGSIFVGVKVDENLFEELESALIMADAGIEA
TESLLTALRARVKKERIEDAAQVKVALRQLLAEHLKPLERRFELGRAQPLVVMIAGVNGAGKTTSIGKLAHTFQRQGASV
LLAAGDTFRAAAREQLIEWGSRNNVTVIAQEGGDPAAVAFDAVNAGRAREAGVVMVDTAGRLPTQLHLMEELKKIRRVIG
KADAKAPHEVLLVVDGNTGQNALAQIRAFDAAIQLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWIGVGEGLEDLQ
PFVAEEFAAALLSD
MFRFFKKKTPAPAAPATPAPPPQEETIASPAPTPEAAPAAAPVAAPEAPAAQPPSTPPPAPVPEPAPVPAPSPVAPPSPV
PAPAAAPTAPVTPAAAAAEPAAEPQAAAAPKKASWLSRLKQGLARTGQSIGSIFVGVKVDENLFEELESALIMADAGIEA
TESLLTALRARVKKERIEDAAQVKVALRQLLAEHLKPLERRFELGRAQPLVVMIAGVNGAGKTTSIGKLAHTFQRQGASV
LLAAGDTFRAAAREQLIEWGSRNNVTVIAQEGGDPAAVAFDAVNAGRAREAGVVMVDTAGRLPTQLHLMEELKKIRRVIG
KADAKAPHEVLLVVDGNTGQNALAQIRAFDAAIQLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWIGVGEGLEDLQ
PFVAEEFAAALLSD
Nucleotide
Download Length: 1245 bp
>NTDB_id=1143724 A6744_RS09135 WP_063492567.1 1956931..1958175(+) (pilA) [Bordetella trematum strain H044680328]
ATGTTCCGCTTCTTCAAGAAAAAAACCCCTGCGCCCGCCGCGCCGGCTACGCCGGCCCCGCCGCCGCAGGAAGAAACCAT
CGCGAGCCCGGCGCCGACGCCCGAGGCCGCGCCTGCGGCTGCGCCTGTTGCGGCGCCCGAGGCCCCGGCCGCTCAGCCGC
CGTCCACGCCGCCGCCTGCCCCGGTCCCGGAGCCTGCCCCGGTCCCGGCGCCTTCGCCCGTAGCGCCGCCTTCGCCGGTA
CCGGCGCCCGCGGCGGCGCCGACCGCGCCCGTGACGCCTGCCGCCGCAGCCGCCGAGCCGGCGGCGGAGCCGCAAGCGGC
GGCCGCACCCAAGAAAGCCTCCTGGCTCAGCCGCCTCAAGCAGGGGCTGGCTCGTACCGGCCAGAGCATCGGCAGCATCT
TCGTCGGCGTCAAGGTCGACGAGAATCTGTTCGAGGAGCTGGAGTCGGCCCTCATCATGGCCGACGCGGGCATCGAGGCC
ACCGAAAGTCTGCTGACCGCTTTGCGCGCACGCGTCAAGAAAGAACGCATCGAGGATGCCGCCCAGGTCAAGGTGGCCTT
GCGCCAGCTGCTGGCCGAGCATCTCAAACCGCTTGAGCGCCGCTTCGAGCTGGGCCGCGCCCAACCGCTGGTGGTCATGA
TTGCGGGCGTGAACGGCGCCGGCAAGACGACTTCCATCGGCAAGCTGGCGCATACCTTCCAGCGCCAGGGCGCCAGCGTG
CTGCTGGCCGCGGGCGATACCTTCCGCGCGGCGGCGCGCGAGCAGCTGATCGAGTGGGGCAGCCGCAACAATGTCACCGT
CATTGCCCAGGAGGGCGGCGACCCGGCCGCTGTCGCCTTTGACGCGGTCAACGCCGGCAGGGCGCGTGAGGCGGGCGTGG
TCATGGTGGACACGGCCGGCCGCCTGCCTACCCAGCTGCACCTGATGGAAGAGCTCAAGAAGATCCGCCGCGTGATCGGC
AAGGCCGACGCCAAGGCGCCGCACGAGGTGCTGCTGGTGGTCGATGGCAACACCGGCCAGAACGCCCTGGCCCAGATCCG
CGCCTTCGACGCCGCGATCCAGCTCACCGGGCTGGTGGTGACCAAGCTCGATGGCACCGCCAAGGGTGGCACGCTGGCGG
CCGTCGCCGCGGGCAGCCAGGGGGTGCGGCCCATCCCGGTCTACTGGATCGGCGTGGGCGAGGGCCTGGAAGACCTGCAG
CCCTTTGTCGCCGAAGAGTTCGCCGCCGCGCTGCTGTCCGACTGA
ATGTTCCGCTTCTTCAAGAAAAAAACCCCTGCGCCCGCCGCGCCGGCTACGCCGGCCCCGCCGCCGCAGGAAGAAACCAT
CGCGAGCCCGGCGCCGACGCCCGAGGCCGCGCCTGCGGCTGCGCCTGTTGCGGCGCCCGAGGCCCCGGCCGCTCAGCCGC
CGTCCACGCCGCCGCCTGCCCCGGTCCCGGAGCCTGCCCCGGTCCCGGCGCCTTCGCCCGTAGCGCCGCCTTCGCCGGTA
CCGGCGCCCGCGGCGGCGCCGACCGCGCCCGTGACGCCTGCCGCCGCAGCCGCCGAGCCGGCGGCGGAGCCGCAAGCGGC
GGCCGCACCCAAGAAAGCCTCCTGGCTCAGCCGCCTCAAGCAGGGGCTGGCTCGTACCGGCCAGAGCATCGGCAGCATCT
TCGTCGGCGTCAAGGTCGACGAGAATCTGTTCGAGGAGCTGGAGTCGGCCCTCATCATGGCCGACGCGGGCATCGAGGCC
ACCGAAAGTCTGCTGACCGCTTTGCGCGCACGCGTCAAGAAAGAACGCATCGAGGATGCCGCCCAGGTCAAGGTGGCCTT
GCGCCAGCTGCTGGCCGAGCATCTCAAACCGCTTGAGCGCCGCTTCGAGCTGGGCCGCGCCCAACCGCTGGTGGTCATGA
TTGCGGGCGTGAACGGCGCCGGCAAGACGACTTCCATCGGCAAGCTGGCGCATACCTTCCAGCGCCAGGGCGCCAGCGTG
CTGCTGGCCGCGGGCGATACCTTCCGCGCGGCGGCGCGCGAGCAGCTGATCGAGTGGGGCAGCCGCAACAATGTCACCGT
CATTGCCCAGGAGGGCGGCGACCCGGCCGCTGTCGCCTTTGACGCGGTCAACGCCGGCAGGGCGCGTGAGGCGGGCGTGG
TCATGGTGGACACGGCCGGCCGCCTGCCTACCCAGCTGCACCTGATGGAAGAGCTCAAGAAGATCCGCCGCGTGATCGGC
AAGGCCGACGCCAAGGCGCCGCACGAGGTGCTGCTGGTGGTCGATGGCAACACCGGCCAGAACGCCCTGGCCCAGATCCG
CGCCTTCGACGCCGCGATCCAGCTCACCGGGCTGGTGGTGACCAAGCTCGATGGCACCGCCAAGGGTGGCACGCTGGCGG
CCGTCGCCGCGGGCAGCCAGGGGGTGCGGCCCATCCCGGTCTACTGGATCGGCGTGGGCGAGGGCCTGGAAGACCTGCAG
CCCTTTGTCGCCGAAGAGTTCGCCGCCGCGCTGCTGTCCGACTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
47.406 |
100 |
0.486 |