Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   A6744_RS05510 Genome accession   NZ_LT546645
Coordinates   1187215..1188642 (-) Length   475 a.a.
NCBI ID   WP_052125644.1    Uniprot ID   A0A157MNK8
Organism   Bordetella trematum strain H044680328     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1182215..1193642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6744_RS05485 (SAMEA3906487_01115) - 1182971..1183600 (+) 630 WP_025514979.1 LysE family transporter -
  A6744_RS05490 (SAMEA3906487_01116) - 1183624..1185231 (+) 1608 WP_063491674.1 peptide chain release factor 3 -
  A6744_RS05495 (SAMEA3906487_01117) - 1185266..1185925 (+) 660 WP_033534324.1 hypothetical protein -
  A6744_RS05500 (SAMEA3906487_01118) bfr 1185991..1186467 (-) 477 WP_025514976.1 bacterioferritin -
  A6744_RS05505 (SAMEA3906487_01119) - 1186827..1187105 (-) 279 WP_033534323.1 bacterioferritin-associated ferredoxin -
  A6744_RS05510 (SAMEA3906487_01120) rpoN/rpoN1 1187215..1188642 (-) 1428 WP_052125644.1 RNA polymerase factor sigma-54 Machinery gene
  A6744_RS05515 (SAMEA3906487_01121) - 1188641..1189288 (+) 648 WP_082832945.1 hypothetical protein -
  A6744_RS05520 (SAMEA3906487_01122) leuA 1189666..1191369 (+) 1704 WP_025514972.1 2-isopropylmalate synthase -
  A6744_RS05525 (SAMEA3906487_01123) - 1191421..1192710 (-) 1290 WP_025514971.1 amidase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 51921.05 Da        Isoelectric Point: 4.9939

>NTDB_id=1143723 A6744_RS05510 WP_052125644.1 1187215..1188642(-) (rpoN/rpoN1) [Bordetella trematum strain H044680328]
MQNIVPMTRPALELRASQHLALTPQLQQSIRLLQLSALELEAEIAQALADNPMLERAEDDVAAPQDAEAASGESAAAELE
DAWEASQRRLDEAGGGDDDLPQAARETTLREHLLGQLALTRAAPRDAALTALLIDELDDNGYLASPLEEIRQWLPVELDI
DDDELRAALRLLQSFEPPGVGARDLAECLSLQLRQPDTACLPEAADVQVLECARRLCAGHLPLLAAGNPQRLREALAVDD
ATLRAARALIVRLDPRPGRAWTAPAADFAVPDVLVHRRAAGWQAVLNPAVMPRLHINQHYANLLANRRESAYASLQGQLQ
QARWMIRNVEQRFDTILRVSQAIVAHQAAFFSEGPAAMRPLILKDIAGELGLHESTISRATAQKFMLTPYGTMELKRFFG
SGVATESGETTSATAVQAHIRQMVAEEEPGRPLSDSQLVQQLADKGIVIARRTVAKYRELLRIAPATVRRAQAGR

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=1143723 A6744_RS05510 WP_052125644.1 1187215..1188642(-) (rpoN/rpoN1) [Bordetella trematum strain H044680328]
ATGCAAAATATTGTACCTATGACTCGTCCTGCGTTAGAACTTCGCGCTTCACAGCATTTGGCATTGACGCCACAGCTGCA
ACAGTCCATTCGATTGTTGCAGCTTTCGGCGCTGGAGCTGGAGGCCGAGATTGCGCAGGCCCTGGCCGACAATCCCATGC
TGGAGCGCGCCGAGGACGATGTGGCCGCGCCGCAGGATGCCGAGGCGGCTTCGGGCGAGTCCGCAGCCGCCGAGCTGGAA
GATGCCTGGGAGGCGTCGCAGCGGCGTCTGGACGAGGCGGGCGGCGGCGATGACGATCTGCCCCAGGCGGCGCGCGAGAC
GACGTTGCGCGAGCATTTGCTGGGTCAGCTGGCGCTTACTCGCGCTGCGCCGCGCGATGCCGCCCTGACCGCCCTGCTGA
TCGACGAACTGGACGACAACGGTTATCTGGCCTCGCCGCTGGAGGAAATCCGGCAGTGGTTGCCGGTCGAACTGGACATC
GACGACGACGAGCTGCGTGCCGCATTGCGACTGTTGCAGTCTTTCGAGCCGCCGGGCGTCGGCGCGCGCGATCTGGCCGA
GTGCCTGTCGCTGCAATTGCGCCAGCCGGATACCGCATGCCTGCCCGAGGCGGCCGACGTCCAGGTGCTGGAGTGCGCCA
GGCGACTGTGCGCCGGCCATTTGCCGCTGCTGGCTGCCGGCAACCCGCAGCGGCTGCGCGAGGCTCTGGCGGTGGATGAC
GCTACCCTGCGGGCTGCGCGCGCCCTGATCGTGCGCCTGGACCCGCGTCCGGGGCGGGCCTGGACGGCCCCGGCGGCCGA
TTTTGCCGTGCCCGATGTCCTGGTGCATCGCCGCGCCGCAGGATGGCAGGCGGTGCTCAATCCGGCGGTCATGCCGCGCC
TGCATATCAATCAGCATTACGCCAACCTGCTGGCGAACCGGCGCGAGAGCGCCTATGCCAGCCTGCAAGGCCAGTTGCAG
CAGGCGCGCTGGATGATACGCAACGTCGAGCAGCGGTTCGATACGATCCTGCGGGTATCGCAGGCCATCGTGGCGCATCA
GGCGGCCTTCTTCAGCGAAGGGCCTGCCGCGATGCGTCCTCTCATCCTCAAGGACATTGCCGGCGAACTGGGCTTGCACG
AGTCGACCATTTCGCGCGCCACCGCCCAGAAATTCATGCTCACGCCGTACGGGACCATGGAGCTCAAGCGTTTTTTCGGC
AGCGGCGTGGCGACCGAGAGCGGCGAGACGACGTCGGCCACGGCCGTGCAGGCGCATATCCGGCAGATGGTGGCCGAGGA
GGAGCCGGGCCGGCCGCTCTCGGATAGCCAGCTTGTCCAGCAGTTGGCCGACAAAGGCATCGTGATCGCCCGACGCACCG
TGGCGAAGTACCGTGAACTGCTGCGCATCGCGCCGGCGACGGTACGGCGCGCGCAGGCGGGGCGTTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(12-55)

Sigma-54, DNA binding domain (Sigma54_DBD)

(315-470)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(103-300)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A157MNK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

49.407

100

0.526

Multiple sequence alignment