Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   AC2117_RS17410 Genome accession   NZ_LS999521
Coordinates   3638069..3638395 (-) Length   108 a.a.
NCBI ID   WP_075431230.1    Uniprot ID   A0A446ZP51
Organism   Acinetobacter calcoaceticus isolate Acinetobacter calcoaceticus str. 2117     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3633069..3643395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AC2117_RS17390 (AC2117_03447) - 3633168..3633797 (-) 630 WP_133975731.1 FHA domain-containing protein -
  AC2117_RS17395 (AC2117_03448) gspD 3633842..3636109 (-) 2268 WP_133975733.1 type II secretion system secretin GspD -
  AC2117_RS17400 (AC2117_03449) - 3636151..3636990 (-) 840 WP_133975735.1 type II secretion system protein N -
  AC2117_RS17405 (AC2117_03450) gspN 3636990..3637733 (-) 744 WP_133975737.1 type II secretion system protein N -
  AC2117_RS17410 (AC2117_03451) hns 3638069..3638395 (-) 327 WP_075431230.1 H-NS family nucleoid-associated regulatory protein Regulator
  AC2117_RS17415 (AC2117_03452) - 3638590..3639030 (-) 441 WP_003654484.1 acyl-CoA thioesterase -
  AC2117_RS17420 (AC2117_03453) - 3639038..3640231 (-) 1194 WP_197730947.1 heme biosynthesis protein HemY -
  AC2117_RS17425 (AC2117_03454) - 3640241..3641083 (-) 843 WP_133975739.1 hypothetical protein -
  AC2117_RS17430 (AC2117_03455) - 3641092..3641859 (-) 768 WP_133975741.1 uroporphyrinogen-III synthase -
  AC2117_RS17435 (AC2117_03456) hemC 3641863..3642780 (-) 918 WP_042895062.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12534.27 Da        Isoelectric Point: 5.3729

>NTDB_id=1143508 AC2117_RS17410 WP_075431230.1 3638069..3638395(-) (hns) [Acinetobacter calcoaceticus isolate Acinetobacter calcoaceticus str. 2117]
MKPDISELSVEELKRLQEEAEALIVSKKDQAIEDAYNQIIEIAEKVGFTVEQLLEFGAQKRKKTTRKSVEPRYRNKNNSE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=1143508 AC2117_RS17410 WP_075431230.1 3638069..3638395(-) (hns) [Acinetobacter calcoaceticus isolate Acinetobacter calcoaceticus str. 2117]
ATGAAACCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGTTTACAAGAAGAAGCGGAAGCTTTAATTGTGAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAAAGTTGGCTTTACTGTTGAACAGCTTC
TTGAATTTGGTGCTCAAAAACGTAAGAAAACTACACGTAAATCTGTAGAACCTCGTTACCGTAACAAAAACAATTCTGAA
GAGACTTGGACTGGTCGTGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A446ZP51

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

96.296

100

0.963

Multiple sequence alignment