Detailed information NTG1143501

Bioinformatically predicted

Overview

• Name: pilF
• Type: Machinery gene
• Locus tag: AC2117_RS16230
• Genome accession: NZ_LS999521
• Coordinates: 3387179..3387979 (-)
• Length: 266 a.a.
• NCBI ID: WP_197730941.1
• Uniprot ID: -
• Organism: Acinetobacter calcoaceticus isolate Acinetobacter calcoaceticus str. 2117
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3382179..3392979

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AC2117_RS16210 (AC2117_03216)	-	3383244..3383942 (-)	699	WP_042894820.1	YfgM family protein	-
AC2117_RS16215 (AC2117_03217)	hisS	3383971..3385263 (-)	1293	WP_133975452.1	histidine--tRNA ligase	-
AC2117_RS16220 (AC2117_03218)	ispG	3385260..3386375 (-)	1116	WP_133975454.1	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	-
AC2117_RS16225 (AC2117_03219)	-	3386397..3387188 (-)	792	WP_133975456.1	helix-turn-helix domain-containing protein	-
AC2117_RS16230 (AC2117_03220)	pilF	3387179..3387979 (-)	801	WP_197730941.1	type IV pilus biogenesis/stability protein PilW	Machinery gene
AC2117_RS16235 (AC2117_03221)	rlmN	3387995..3389230 (-)	1236	WP_133975458.1	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	-
AC2117_RS16240 (AC2117_03222)	ndk	3389354..3389785 (-)	432	WP_003654870.1	nucleoside-diphosphate kinase	-
AC2117_RS16245 (AC2117_03223)	iscX	3389899..3390099 (-)	201	WP_069036256.1	Fe-S cluster assembly protein IscX	-
AC2117_RS16250 (AC2117_03224)	-	3390199..3390750 (-)	552	WP_319923170.1	phosphatase PAP2 family protein	-
AC2117_RS16255 (AC2117_03225)	-	3390775..3392061 (-)	1287	WP_133976413.1	glycosyltransferase family 4 protein	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 30131.32 Da
• Isoelectric Point: 9.0417

>NTDB_id=1143501 AC2117_RS16230 WP_197730941.1 3387179..3387979(-) (pilF) [Acinetobacter calcoaceticus isolate Acinetobacter calcoaceticus str. 2117]
MSNPKLKTVFCMGVAVALLASGCQTTHVQKKDPEKAVKVRTQLAAEHIRSGDLDSAKRALDQALSVDSRDATANMMMGIL
LQQEGSKPNLEKAEHYFKRAISSEPDNAQAHNNYGTYLYQMERYNDAIEQFRIAGTTLGYDQRYQALENLGRIYLKLGDV
ANAEKTFKQSLLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVRTVGQKNQGARALWIGVRVARANADKMGMQVLVNQ
LRALFPESPEYQRYLQLQYSTEAVWK

Nucleotide

• Length: 801 bp

>NTDB_id=1143501 AC2117_RS16230 WP_197730941.1 3387179..3387979(-) (pilF) [Acinetobacter calcoaceticus isolate Acinetobacter calcoaceticus str. 2117]
TTGAGTAATCCAAAGTTAAAAACGGTATTTTGTATGGGGGTTGCAGTTGCGCTTTTGGCAAGTGGTTGCCAAACAACGCA
TGTGCAAAAAAAAGACCCAGAAAAAGCGGTAAAGGTGCGTACACAACTTGCTGCTGAACATATCCGTTCGGGTGACTTGG
ATTCAGCAAAGCGAGCGCTTGATCAAGCTCTAAGTGTAGATAGCCGTGATGCAACGGCAAATATGATGATGGGTATTTTA
CTACAGCAAGAAGGTAGTAAGCCGAACTTAGAAAAAGCAGAACATTATTTTAAACGAGCAATTTCATCTGAACCAGATAA
TGCTCAAGCACATAATAATTATGGTACTTATTTATACCAAATGGAACGCTATAATGATGCGATCGAGCAATTTCGTATTG
CTGGCACAACATTAGGGTATGACCAACGCTATCAGGCGTTAGAAAATCTGGGGCGTATTTATTTAAAATTGGGTGATGTT
GCGAATGCTGAAAAAACATTCAAACAATCACTCCTTGCTAACCGCGACTCTTATATTTCAATGTTAGAGTTAGCGGAAAT
TTTTTATTTGCAGCAGCAGATTCCGGCTGCTACACAAATGTATGAGCAATATGTTCGTACAGTGGGGCAGAAAAATCAGG
GTGCAAGAGCACTTTGGATTGGTGTAAGAGTGGCTCGAGCCAATGCGGATAAAATGGGAATGCAAGTGTTAGTAAACCAA
TTACGTGCCTTGTTCCCGGAAAGTCCAGAATATCAACGTTATTTGCAATTACAGTATAGTACTGAGGCCGTATGGAAATA
A

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_16) (149-206)

• Tetratricopeptide repeat (TPR_16) (89-133)

• Tetratricopeptide repeat (TPR_8) (39-68)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilF	Acinetobacter baumannii D1279779	93.985	100	0.94
pilF	Acinetobacter baylyi ADP1	75	97.744	0.733