Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   AC2117_RS10260 Genome accession   NZ_LS999521
Coordinates   2147591..2147971 (-) Length   126 a.a.
NCBI ID   WP_133973859.1    Uniprot ID   A0A446ZK36
Organism   Acinetobacter calcoaceticus isolate Acinetobacter calcoaceticus str. 2117     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2142591..2152971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AC2117_RS10230 (AC2117_02026) tadA 2142598..2143101 (-) 504 WP_075431386.1 tRNA adenosine(34) deaminase TadA -
  AC2117_RS10235 (AC2117_02027) - 2143107..2144231 (-) 1125 WP_081399972.1 enoyl-CoA hydratase/isomerase family protein -
  AC2117_RS10240 (AC2117_02028) ung 2144228..2144941 (-) 714 WP_005041081.1 uracil-DNA glycosylase -
  AC2117_RS10245 (AC2117_02029) - 2144991..2145587 (-) 597 WP_042896517.1 6-pyruvoyl trahydropterin synthase family protein -
  AC2117_RS10250 (AC2117_02030) gspK 2145817..2146776 (-) 960 WP_133973855.1 type II secretion system minor pseudopilin GspK -
  AC2117_RS10255 (AC2117_02031) xcpW 2146776..2147591 (-) 816 WP_133973857.1 type II secretion system minor pseudopilin GspJ Machinery gene
  AC2117_RS10260 (AC2117_02032) xcpV 2147591..2147971 (-) 381 WP_133973859.1 type II secretion system minor pseudopilin GspI Machinery gene
  AC2117_RS10265 (AC2117_02033) - 2147961..2148515 (-) 555 WP_133973861.1 type II secretion system protein -
  AC2117_RS10270 (AC2117_02034) - 2148525..2149133 (-) 609 WP_042896519.1 TetR/AcrR family transcriptional regulator -
  AC2117_RS10275 (AC2117_02035) - 2149170..2149943 (-) 774 WP_133973863.1 TatD family hydrolase -
  AC2117_RS10280 (AC2117_02036) - 2149961..2150302 (-) 342 WP_042896523.1 PilZ domain-containing protein -
  AC2117_RS10285 (AC2117_02037) - 2150313..2151293 (-) 981 WP_133973865.1 DNA polymerase III subunit delta' -
  AC2117_RS10290 (AC2117_02038) kdsB 2151307..2152068 (-) 762 WP_133973867.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13934.09 Da        Isoelectric Point: 9.4463

>NTDB_id=1143493 AC2117_RS10260 WP_133973859.1 2147591..2147971(-) (xcpV) [Acinetobacter calcoaceticus isolate Acinetobacter calcoaceticus str. 2117]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVALMEINQEWLQGTQSKQVTSQGETWQI
DKSAESTVSPNVQKVDLQVSLYDSDKGKVQNGITHLVFFNYPMKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=1143493 AC2117_RS10260 WP_133973859.1 2147591..2147971(-) (xcpV) [Acinetobacter calcoaceticus isolate Acinetobacter calcoaceticus str. 2117]
ATGAAATCTAAAGGCTTTACTCTATTAGAGGTAATGGTAGCTTTAGCAATTTTTGCAGTAGCTGCTGTCGCGTTAACTAA
AGTGGCCATGCAATATACCCAATCTACCTCGAATGCAATTCTTAGAACAAAAGCACAGTTTGTAGCAATGAATGAAGTTG
CTTTAATGGAGATTAATCAGGAATGGCTTCAAGGCACTCAAAGTAAGCAGGTTACTTCTCAAGGTGAAACTTGGCAAATT
GATAAATCTGCTGAGTCCACAGTCAGCCCGAATGTTCAGAAAGTAGACTTGCAAGTTAGCTTATATGATTCTGATAAAGG
GAAAGTTCAAAATGGTATTACCCATTTGGTGTTTTTTAATTATCCAATGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-102)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A446ZK36

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

94.444

100

0.944

Multiple sequence alignment