Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   AC2117_RS02420 Genome accession   NZ_LS999521
Coordinates   500088..500972 (+) Length   294 a.a.
NCBI ID   WP_133971678.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus isolate Acinetobacter calcoaceticus str. 2117     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 495088..505972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AC2117_RS02395 (AC2117_00474) - 495401..496648 (-) 1248 WP_133971674.1 YihY family inner membrane protein -
  AC2117_RS02400 (AC2117_00475) wrbA 497009..497617 (+) 609 WP_197730971.1 NAD(P)H:quinone oxidoreductase -
  AC2117_RS02405 (AC2117_00476) - 497665..498240 (-) 576 WP_042895139.1 xanthine phosphoribosyltransferase -
  AC2117_RS02410 (AC2117_00477) - 498312..499025 (-) 714 WP_003653602.1 DUF3108 domain-containing protein -
  AC2117_RS02415 (AC2117_00478) - 499184..499855 (-) 672 WP_005038515.1 hypothetical protein -
  AC2117_RS02420 (AC2117_00479) tonB2 500088..500972 (+) 885 WP_133971678.1 energy transducer TonB Machinery gene
  AC2117_RS02425 (AC2117_00480) ybeY 501074..501556 (-) 483 WP_133971680.1 rRNA maturation RNase YbeY -
  AC2117_RS02430 (AC2117_00481) - 501834..502922 (-) 1089 WP_016140133.1 PhoH family protein -
  AC2117_RS02435 (AC2117_00482) miaB 502960..504411 (-) 1452 WP_133971682.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33606.16 Da        Isoelectric Point: 9.1103

>NTDB_id=1143486 AC2117_RS02420 WP_133971678.1 500088..500972(+) (tonB2) [Acinetobacter calcoaceticus isolate Acinetobacter calcoaceticus str. 2117]
MLNKRSLSIEPFYHWWQDRVFIAATILAILLHIFVLLIHFAMPSPSEQSTKEIAISIRSSNEPVQQADFLAQADQQGSGT
FREAHRTSSDTPNPMPNDASTGDAQLESLQKVQQQRELKFEEKVLMTVLSWQKQADASQRKKELEQLQSQFQAKAAMVAS
LEAQYLQRRQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKLQQLKGEVRLMVILNAQGGIRAIRL
LESSGYSVLDEAAKSSVRRGAPFGHFDTTMKDISELRIVRTWRFDPAQAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=1143486 AC2117_RS02420 WP_133971678.1 500088..500972(+) (tonB2) [Acinetobacter calcoaceticus isolate Acinetobacter calcoaceticus str. 2117]
ATGTTGAATAAAAGAAGTCTATCCATAGAGCCTTTTTATCATTGGTGGCAAGACCGAGTCTTTATTGCTGCGACAATATT
GGCAATCTTACTGCATATTTTTGTGTTGCTTATTCACTTTGCGATGCCTAGCCCATCAGAGCAATCTACTAAAGAAATTG
CAATTTCAATTCGATCAAGCAATGAGCCAGTTCAGCAAGCAGACTTTTTGGCACAAGCGGACCAGCAAGGTTCGGGCACA
TTTCGTGAAGCCCACCGTACCTCTAGCGATACACCAAATCCTATGCCTAATGATGCGTCAACTGGAGATGCACAGTTAGA
AAGTTTGCAAAAGGTTCAGCAACAAAGAGAGCTTAAATTTGAAGAAAAAGTCTTAATGACTGTTTTGAGTTGGCAAAAAC
AAGCTGATGCAAGTCAAAGAAAAAAAGAACTAGAACAATTACAAAGTCAATTTCAGGCAAAAGCTGCGATGGTTGCGAGC
CTTGAAGCACAATATTTACAACGTAGACAAGATTTCAGCCGCCAGCAAAAAATAAAAACGGTAGATGGAATTCAGGCGAA
GAAAGATGCCTCGGCTGCTTATTTAGATAAGTTCCGTGAAAAAGTGGAGTTGTATGGTAATCGCTATTATCCGGAAGAAG
CCAAATTGCAACAGTTGAAAGGCGAAGTTCGTTTAATGGTTATTTTAAATGCTCAAGGTGGAATTCGTGCAATCCGGTTA
CTTGAGAGTTCGGGGTATTCGGTATTAGATGAAGCTGCAAAGTCTTCAGTACGTCGCGGCGCACCATTTGGACATTTTGA
TACCACTATGAAAGATATTTCTGAATTACGTATTGTGCGTACTTGGCGTTTTGATCCGGCTCAAGCAGAATTTGAAGTGC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

88.435

100

0.884

Multiple sequence alignment