Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   AC2117_RS01575 Genome accession   NZ_LS999521
Coordinates   338033..338674 (+) Length   213 a.a.
NCBI ID   WP_133971489.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus isolate Acinetobacter calcoaceticus str. 2117     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 333033..343674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AC2117_RS01555 (AC2117_00308) - 333038..333370 (+) 333 WP_003653820.1 hypothetical protein -
  AC2117_RS01560 (AC2117_00309) - 333373..334197 (+) 825 WP_133971483.1 putative RNA methyltransferase -
  AC2117_RS01565 (AC2117_00310) ponA 334252..336813 (-) 2562 WP_133971485.1 penicillin-binding protein PBP1a -
  AC2117_RS01570 (AC2117_00311) pilM 336975..338033 (+) 1059 WP_133971487.1 pilus assembly protein PilM Machinery gene
  AC2117_RS01575 (AC2117_00312) pilN 338033..338674 (+) 642 WP_133971489.1 PilN domain-containing protein Machinery gene
  AC2117_RS01580 (AC2117_00313) pilO 338671..339420 (+) 750 WP_133971491.1 type 4a pilus biogenesis protein PilO Machinery gene
  AC2117_RS01585 (AC2117_00314) pilP 339431..339958 (+) 528 WP_133971492.1 pilus assembly protein PilP Machinery gene
  AC2117_RS01590 (AC2117_00315) pilQ 340021..342186 (+) 2166 WP_133971494.1 type IV pilus secretin PilQ family protein Machinery gene
  AC2117_RS01595 (AC2117_00316) aroK 342198..342767 (+) 570 WP_042895460.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23853.18 Da        Isoelectric Point: 6.4518

>NTDB_id=1143472 AC2117_RS01575 WP_133971489.1 338033..338674(+) (pilN) [Acinetobacter calcoaceticus isolate Acinetobacter calcoaceticus str. 2117]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGIATVFSGWFYLNQKLNDQEQANQLITSTNQTLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASSWYRNAFMNSFLA
TEEKKDKTASSLLPRVEDSYGSFVVTVDLGEAGVTTTDDTANTSVSTDKGAVK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1143472 AC2117_RS01575 WP_133971489.1 338033..338674(+) (pilN) [Acinetobacter calcoaceticus isolate Acinetobacter calcoaceticus str. 2117]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAACGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATCGCCACTGTATTTTCTGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCGA
ATCAGCTCATTACCAGTACAAACCAGACTTTAGATCAACAGCTTAAAACCTTAAATGGTCTGCAAGAACAGCGTGATGCC
ATTATCGAGCGTATGAAACTTATTCAAGGATTGCAAAGCCAGCGTCCTGTTGTCGTGCGTTTGGTAGATGAATTGGTGCG
CGTAACTCCTCCAGCGATGTATTTGACTAAATTTAGCCGAACTGGAGATAAATTTACTATTGAAGGTAAAGCTGAAAGTC
CAAATACGGTTGCGGAGTTATTACGTAATCTCGAAGCATCATCATGGTATCGCAACGCTTTTATGAACTCTTTCTTGGCG
ACTGAAGAGAAAAAAGATAAGACTGCGAGTTCGCTGCTTCCTAGAGTGGAAGATAGCTATGGTAGTTTTGTTGTGACTGT
TGATTTGGGCGAAGCGGGGGTGACCACAACAGATGATACCGCCAATACGTCTGTAAGTACGGATAAGGGGGCGGTTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

87.793

100

0.878
  comN Acinetobacter baylyi ADP1

73.529

95.775

0.704

Multiple sequence alignment