Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ECLTO80_RS08495 Genome accession   NZ_LS999206
Coordinates   1749293..1749919 (+) Length   208 a.a.
NCBI ID   WP_017384804.1    Uniprot ID   A0AA37AJW2
Organism   Enterobacter hormaechei isolate EC-TO80     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1744293..1754919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECLTO80_RS08475 (ECLTO80_01716) - 1744692..1746452 (-) 1761 WP_033487273.1 Lon protease family protein -
  ECLTO80_RS08480 (ECLTO80_01717) matP 1746639..1747091 (+) 453 WP_006809347.1 macrodomain Ter protein MatP -
  ECLTO80_RS08485 (ECLTO80_01718) ompA 1747157..1748209 (-) 1053 WP_017694761.1 porin OmpA -
  ECLTO80_RS08490 (ECLTO80_01719) sulA 1748566..1749075 (-) 510 WP_032104231.1 SOS-induced cell division inhibitor SulA -
  ECLTO80_RS08495 (ECLTO80_01720) sxy/tfoX 1749293..1749919 (+) 627 WP_017384804.1 TfoX/Sxy family DNA transformation protein Regulator
  ECLTO80_RS08500 (ECLTO80_01721) yccS 1749876..1752038 (-) 2163 WP_133982570.1 YccS family putative transporter -
  ECLTO80_RS08505 (ECLTO80_01722) - 1752057..1752503 (-) 447 WP_003858149.1 YccF domain-containing protein -
  ECLTO80_RS08510 (ECLTO80_01723) helD 1752626..1754680 (+) 2055 WP_133982572.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24018.63 Da        Isoelectric Point: 9.4592

>NTDB_id=1143453 ECLTO80_RS08495 WP_017384804.1 1749293..1749919(+) (sxy/tfoX) [Enterobacter hormaechei isolate EC-TO80]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELMEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=1143453 ECLTO80_RS08495 WP_017384804.1 1749293..1749919(+) (sxy/tfoX) [Enterobacter hormaechei isolate EC-TO80]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAGGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCCTCTTTTCTGACCCTGATGAAACGAGGACGGCCAGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAGCTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAACGCCATCAGCGTAACCGGCTTAAGGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCCATCGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTATGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572

Multiple sequence alignment