Detailed information NTG1143427

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PPRCHA0_RS09240
• Genome accession: NZ_LS999205
• Coordinates: 1998174..2000405 (+)
• Length: 743 a.a.
• NCBI ID: WP_015634696.1
• Uniprot ID: A0A2C9EIX9
• Organism: Pseudomonas protegens CHA0
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1993174..2005405

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PPRCHA0_RS09215 (PPRCHA0_1786)	-	1994299..1994958 (+)	660	WP_011060094.1	transglutaminase family protein	-
PPRCHA0_RS09220 (PPRCHA0_1787)	-	1995001..1995624 (+)	624	WP_011060095.1	glutathione S-transferase family protein	-
PPRCHA0_RS09225 (PPRCHA0_1788)	-	1995757..1996689 (+)	933	WP_011060096.1	ABC transporter ATP-binding protein	-
PPRCHA0_RS09230 (PPRCHA0_1789)	-	1996686..1997465 (+)	780	WP_011060097.1	ABC transporter permease	-
PPRCHA0_RS09235 (PPRCHA0_1790)	-	1997519..1998034 (-)	516	WP_015634695.1	DUF2062 domain-containing protein	-
PPRCHA0_RS09240 (PPRCHA0_1791)	comA	1998174..2000405 (+)	2232	WP_015634696.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PPRCHA0_RS09245 (PPRCHA0_1792)	exbB	2000508..2001143 (+)	636	WP_011060100.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PPRCHA0_RS09250 (PPRCHA0_1793)	-	2001140..2001568 (+)	429	WP_011060101.1	biopolymer transporter ExbD	-
PPRCHA0_RS09255 (PPRCHA0_1794)	lpxK	2001568..2002578 (+)	1011	WP_015634697.1	tetraacyldisaccharide 4'-kinase	-
PPRCHA0_RS09260 (PPRCHA0_1795)	-	2002603..2002788 (+)	186	WP_011060103.1	Trm112 family protein	-
PPRCHA0_RS09265 (PPRCHA0_1796)	kdsB	2002785..2003549 (+)	765	WP_011060104.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PPRCHA0_RS09270 (PPRCHA0_1797)	-	2003549..2004013 (+)	465	WP_015634698.1	low molecular weight protein-tyrosine-phosphatase	-
PPRCHA0_RS09275 (PPRCHA0_1798)	murB	2004010..2005029 (+)	1020	WP_011060106.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81353.72 Da
• Isoelectric Point: 10.8644

>NTDB_id=1143427 PPRCHA0_RS09240 WP_015634696.1 1998174..2000405(+) (comA) [Pseudomonas protegens CHA0]
MRSAMLALAAGLLALGFMPALPPGWLLLCMAILALMLLPFRTHPVAFFLFGFTWACVSAQSALDDRLAPRLESQTRWLEG
RVSGLPEQAGGVVRFELEDAQARRERLPRRMRLAWHEGPALKSGERWRLAVKLRQPMGLLNPQGFDYQAWLLARRIGATG
TVKAGQLLAPAPQAWRQGLRQRLLEVEAQGRGAGLAALVMGDGSGLTRQDWQLLQDTGTVHLMVISGQHISLLAGVIYFS
VAGLARHGLWPERLPWLPWACALAWLGALGYGLLAGFDVPVQRACVMVALVLLWRMRFRHLRAGWPLLLALNAVLLAEPL
ASLQAGFWLSFAAVAILILIFAGRLGAWSWWQGWTRAQWLIAIGLLPPLLALGLPISLSGPLANLLAVPWISFLVLPPAL
LGSLLLAVPYVGEGLLWLAGGLLDGLFRLLGLIAGGWPAWVPPQIPLWLWGMNALGCLLLLLPRGVPMRVLGWPLLLLAV
WPPLARVPEGEVEVWQLDVGQGLSFILRTRDHALLYDAGARVAEFDLGERVVVPTLHRLGIRRLDLMLLSHADNDHAGGA
QAVQRAMPVGEVRGGQPDALPAGLQARPCDSGLSWVWNGVRFRQWQWVAATDGNQASCVLQVEAAGERLLLTGDIDARAE
RALLDSPLAVRTHWLQAPHHGSRTSSSMALLQRLAPDAVLISRGRGNAFGHPHPQVLARYRRLDMAIYDSAEQGALRLQL
GAFGAAHGLREQRRFWREPPAMP

Nucleotide

• Length: 2232 bp

>NTDB_id=1143427 PPRCHA0_RS09240 WP_015634696.1 1998174..2000405(+) (comA) [Pseudomonas protegens CHA0]
ATGCGTAGCGCAATGCTGGCGCTGGCTGCGGGGCTGCTGGCGCTGGGTTTCATGCCGGCCTTGCCCCCAGGCTGGCTGCT
GCTGTGTATGGCGATACTGGCCTTGATGCTGTTGCCGTTTCGTACACATCCGGTGGCATTTTTCCTGTTCGGTTTCACCT
GGGCCTGTGTCTCCGCGCAGTCGGCCCTTGATGATCGCCTGGCGCCGCGCCTGGAGTCACAGACCCGCTGGCTGGAGGGG
CGGGTGAGCGGCCTGCCGGAGCAGGCGGGCGGCGTGGTGCGTTTCGAGCTGGAAGATGCCCAGGCCCGCCGTGAGCGGCT
GCCCCGGCGCATGCGCCTGGCCTGGCATGAGGGCCCGGCGCTCAAGAGTGGCGAGCGCTGGCGGCTGGCGGTCAAGCTTC
GCCAGCCGATGGGTTTGTTGAATCCCCAGGGCTTCGATTACCAGGCCTGGCTGCTGGCGCGCCGTATCGGCGCCACCGGC
ACGGTCAAGGCCGGGCAGTTACTGGCACCGGCCCCGCAGGCCTGGCGGCAAGGCTTGCGCCAGCGCTTGCTAGAGGTCGA
GGCTCAGGGACGCGGTGCGGGGCTGGCGGCGCTGGTGATGGGCGACGGTTCCGGCCTGACGCGGCAAGACTGGCAGCTGT
TGCAGGACACCGGCACCGTCCACCTGATGGTGATTTCCGGGCAGCACATCAGCCTGCTGGCTGGGGTGATCTATTTCTCG
GTGGCCGGGCTGGCCCGCCATGGTCTCTGGCCCGAGCGCTTGCCGTGGTTGCCCTGGGCCTGTGCCCTGGCCTGGCTCGG
CGCCCTGGGCTACGGCCTGCTGGCGGGGTTCGATGTGCCAGTGCAGCGCGCCTGTGTGATGGTCGCCCTGGTACTGCTCT
GGCGCATGCGCTTTCGCCATCTGCGGGCCGGCTGGCCCCTGCTGCTGGCGTTGAATGCGGTGTTGCTGGCCGAGCCGCTG
GCCAGCTTGCAGGCGGGGTTCTGGCTGTCCTTTGCCGCAGTGGCAATCCTGATCTTGATCTTTGCCGGGCGCCTGGGGGC
GTGGAGCTGGTGGCAGGGCTGGACCCGGGCCCAATGGTTGATCGCCATTGGCTTGCTGCCGCCGTTGCTGGCTCTGGGGC
TGCCTATCAGCCTCAGCGGGCCGCTGGCCAATTTGCTGGCGGTGCCCTGGATCAGCTTTCTGGTGTTGCCGCCGGCTTTG
CTCGGCAGCCTGCTGCTGGCGGTGCCTTATGTGGGTGAGGGCCTGTTGTGGCTGGCCGGTGGATTGCTGGACGGGTTGTT
CCGCTTGCTCGGATTGATTGCCGGTGGGTGGCCGGCCTGGGTGCCGCCGCAGATCCCTCTGTGGCTATGGGGCATGAATG
CTCTGGGCTGCCTGTTGCTGCTGTTGCCCAGGGGCGTGCCCATGCGGGTTCTGGGTTGGCCGCTGTTGCTGCTGGCGGTC
TGGCCACCCCTGGCGCGCGTGCCCGAAGGCGAGGTGGAGGTCTGGCAGCTGGATGTGGGGCAGGGCCTGTCATTCATCCT
GCGTACCCGTGATCACGCCCTGCTGTATGACGCTGGCGCGCGGGTCGCCGAGTTCGACCTGGGAGAGCGAGTGGTAGTGC
CGACCCTGCACAGGCTCGGCATCCGGCGGCTGGACCTGATGCTGCTCAGCCATGCCGACAACGACCATGCCGGTGGCGCC
CAGGCGGTGCAGCGCGCAATGCCCGTGGGCGAGGTCCGCGGTGGCCAGCCCGACGCCTTGCCCGCGGGCCTGCAGGCAAG
GCCTTGCGACAGTGGGCTGAGCTGGGTGTGGAATGGCGTGCGCTTTCGCCAGTGGCAATGGGTGGCGGCGACCGACGGCA
ATCAGGCCTCGTGCGTGCTCCAGGTCGAGGCTGCCGGCGAGCGCTTGCTGCTCACCGGGGACATCGACGCCCGTGCCGAG
CGAGCCTTGCTCGACAGCCCGCTGGCGGTGCGGACCCACTGGCTGCAGGCCCCCCATCACGGCAGCCGTACCTCTTCATC
CATGGCCTTGCTGCAGCGGCTGGCCCCCGACGCGGTGCTGATTTCCCGTGGGCGGGGCAATGCCTTCGGCCACCCCCATC
CTCAAGTGCTGGCACGCTATCGGCGCCTGGACATGGCAATTTATGACAGTGCCGAACAGGGCGCTCTGAGGCTGCAACTG
GGGGCCTTCGGGGCGGCGCATGGCCTTCGCGAGCAGCGGCGATTCTGGCGTGAGCCGCCCGCAATGCCTTAA

Domains

Predicted by InterProScan.

• Domain of unknown function (DUF4131) (DUF4131) (20-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

• Competence protein (Competence) (198-464)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.575	96.501	0.623