Detailed information NTG1143353

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: D5R51_RS10995
• Genome accession: NZ_LS997867
• Coordinates: 2388420..2389427 (-)
• Length: 335 a.a.
• NCBI ID: WP_119091513.1
• Uniprot ID: -
• Organism: Vibrio paracholerae strain NCTC 30
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2383420..2394427

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D5R51_RS10985 (SAMEA104470976_02191)	cysM	2384583..2385470 (+)	888	WP_001279365.1	cysteine synthase CysM	-
D5R51_RS10990 (SAMEA104470976_02192)	mutS	2385738..2388326 (+)	2589	WP_119091711.1	DNA mismatch repair protein MutS	-
D5R51_RS10995 (SAMEA104470976_02193)	rpoS	2388420..2389427 (-)	1008	WP_119091513.1	RNA polymerase sigma factor RpoS	Regulator
D5R51_RS11000 (SAMEA104470976_02194)	nlpD	2389501..2390436 (-)	936	WP_032480388.1	murein hydrolase activator NlpD	-
D5R51_RS11005 (SAMEA104470976_02195)	-	2390436..2391062 (-)	627	WP_000002980.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
D5R51_RS11010 (SAMEA104470976_02196)	surE	2391055..2391807 (-)	753	WP_057644395.1	5'/3'-nucleotidase SurE	-
D5R51_RS11015 (SAMEA104470976_02197)	truD	2391809..2392894 (-)	1086	WP_119091515.1	tRNA pseudouridine(13) synthase TruD	-
D5R51_RS11020 (SAMEA104470976_02198)	ispF	2392924..2393400 (-)	477	WP_000619209.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
D5R51_RS11025 (SAMEA104470976_02199)	ispD	2393397..2394095 (-)	699	WP_084998296.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
D5R51_RS11030 (SAMEA104470976_02200)	ftsB	2394092..2394376 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38457.27 Da
• Isoelectric Point: 4.3646

>NTDB_id=1143353 D5R51_RS10995 WP_119091513.1 2388420..2389427(-) (rpoS) [Vibrio paracholerae strain NCTC 30]
MSVSNTVTKVEEFDFEDEALEVLETDAELASDEELVAVEGASEDAREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIHLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=1143353 D5R51_RS10995 WP_119091513.1 2388420..2389427(-) (rpoS) [Vibrio paracholerae strain NCTC 30]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCGCCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGATGCTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACCGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGCGATGAAGCCGCACGCAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCATCTACCTATCCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACGCCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGTGATGGTGATAAGGCACTGCTGGATATTTTGCCA
GACTCACACAATGCTGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCTCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	99.104	100	0.991