Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   D5R51_RS10855 Genome accession   NZ_LS997867
Coordinates   2361685..2362203 (-) Length   172 a.a.
NCBI ID   WP_002031051.1    Uniprot ID   -
Organism   Vibrio paracholerae strain NCTC 30     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2356685..2367203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5R51_RS10830 (SAMEA104470976_02160) rimM 2356794..2357348 (-) 555 WP_119091504.1 ribosome maturation factor RimM -
  D5R51_RS10835 (SAMEA104470976_02161) rpsP 2357376..2357624 (-) 249 WP_000256449.1 30S ribosomal protein S16 -
  D5R51_RS10840 (SAMEA104470976_02162) ffh 2357860..2359245 (-) 1386 WP_119091505.1 signal recognition particle protein -
  D5R51_RS10845 (SAMEA104470976_02163) - 2359458..2360252 (+) 795 WP_000369277.1 inner membrane protein YpjD -
  D5R51_RS10850 (SAMEA104470976_02164) - 2360335..2361615 (+) 1281 WP_000340993.1 HlyC/CorC family transporter -
  D5R51_RS10855 (SAMEA104470976_02165) luxS 2361685..2362203 (-) 519 WP_002031051.1 S-ribosylhomocysteine lyase Regulator
  D5R51_RS10860 (SAMEA104470976_02166) gshA 2362381..2363952 (-) 1572 WP_119091506.1 glutamate--cysteine ligase -
  D5R51_RS10865 (SAMEA104470976_02167) - 2364064..2366918 (-) 2855 Protein_2065 M16 family metallopeptidase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19110.93 Da        Isoelectric Point: 5.2199

>NTDB_id=1143350 D5R51_RS10855 WP_002031051.1 2361685..2362203(-) (luxS) [Vibrio paracholerae strain NCTC 30]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKTIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1143350 D5R51_RS10855 WP_002031051.1 2361685..2362203(-) (luxS) [Vibrio paracholerae strain NCTC 30]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACCCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGTAATCACCTCAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACTGGTTTCTATATGAGCTTGATTGGTGCGCCGACAGAGCAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTAGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTCGAAGAAGCCAAAACGATTGCGAAAAACGTGATTGCGGCAGGGATCTCGGTTAACCGTAACGATGAGTTGGCG
CTACCTGAATCTATGCTCAATGAGCTGAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

99.419

100

0.994

Multiple sequence alignment