Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   D5R51_RS04935 Genome accession   NZ_LS997867
Coordinates   1030833..1032257 (-) Length   474 a.a.
NCBI ID   WP_119091026.1    Uniprot ID   -
Organism   Vibrio paracholerae strain NCTC 30     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1025833..1037257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5R51_RS04910 (SAMEA104470976_00978) purT 1026342..1027517 (-) 1176 WP_000468081.1 phosphoribosylglycinamide formyltransferase 2 -
  D5R51_RS04915 (SAMEA104470976_00979) - 1027671..1028546 (-) 876 WP_119091024.1 AEC family transporter -
  D5R51_RS04920 (SAMEA104470976_00980) cdd 1028705..1029592 (-) 888 WP_119091025.1 cytidine deaminase -
  D5R51_RS04925 (SAMEA104470976_00981) - 1029762..1030436 (-) 675 WP_000266239.1 LrgB family protein -
  D5R51_RS04930 (SAMEA104470976_00982) - 1030427..1030801 (-) 375 WP_001881007.1 CidA/LrgA family protein -
  D5R51_RS04935 (SAMEA104470976_00983) sbcB 1030833..1032257 (-) 1425 WP_119091026.1 exodeoxyribonuclease I Machinery gene
  D5R51_RS04940 (SAMEA104470976_00984) - 1032401..1033774 (-) 1374 WP_113600904.1 L-cystine transporter -
  D5R51_RS04945 - 1033952..1034125 (+) 174 Protein_929 peptide-methionine (R)-S-oxide reductase -
  D5R51_RS04950 (SAMEA104470976_00985) cobT 1034598..1035623 (+) 1026 WP_259329286.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  D5R51_RS04955 (SAMEA104470976_00986) - 1035623..1036408 (+) 786 WP_000718971.1 adenosylcobinamide-GDP ribazoletransferase -
  D5R51_RS04960 (SAMEA104470976_00987) cobU 1036417..1036956 (+) 540 WP_119091028.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54576.01 Da        Isoelectric Point: 6.0062

>NTDB_id=1143340 D5R51_RS04935 WP_119091026.1 1030833..1032257(-) (sbcB) [Vibrio paracholerae strain NCTC 30]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANIQGLAEP
EFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAQ
KIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADK
RIEPLLFRYRARHYPHTLTDTEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYRYVEKLAC

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=1143340 D5R51_RS04935 WP_119091026.1 1030833..1032257(-) (sbcB) [Vibrio paracholerae strain NCTC 30]
ATGCAGCAAGAACACCAGCCCACATTCTTCTTCTTTGACTACGAGACTTGGGGAGTCAATCCCGCCAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGTGAGCCTTTGGTGATTTACTGTCAACTGCCCAACG
ACTATTTACCTGCTCCTGAAGCCGCATTGATCACAGGGATCACCCCTCAAAAAGCCAATATCCAAGGTCTGGCGGAGCCC
GAATTTATCGCGCGTATTCATGCTGAGCTCTCCACACCCAATACCACCAGCCTAGGTTATAACAGCATACGTTTTGATGA
TGAAGTGACGCGCTACACCTGTTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAGCACGGTAATTCCCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATCGAGTGGCCGGAAAATGATGACGGCTTCACC
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCGATGGCCGATGTGATTGC
CACCATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGCA
AGCTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGCCACTAC
ACCAGCTGGATTGTGCCGATTGCTTGGCATCCGACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCGCTGCTGGAGCTCGATGCCGAAACGCTGCAAGCACGTCTCTATACGCGGTATGAAGACCTAGCGCCGGATGAGCTAC
CAGTACCCGTGAAATTGGTGCATCTCAATAAATGTCCTATTCTGGCTCCGGCCAAAACCTTGACCGCAGAAAATGCACAA
AAGATTGGTATTGACCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGCCAACACCCAGAGATTCGTGAAAAGCTGGT
GACGGTATTTAGCCAAGAGCGCGAATTTAACCAAGAAAGTGATGTGGATAGCCAACTCTATGCCGGTTTTTTCTCCCCAG
CCGATCGTGCGGCAATGGAGATCATCCGCACCACTGCACCGGAGAATCTGGGCAGCTTAGCGATACAGGTGGCCGATAAG
CGCATTGAACCACTGCTGTTTCGTTATCGTGCGCGCCATTATCCCCATACCTTAACCGATACCGAGCAACGCCGCTGGGC
AGCGCATTGCCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTGGTGCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCGTTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-191)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

98.945

100

0.989

Multiple sequence alignment