Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EC3426_RS08875 Genome accession   NZ_LS992185
Coordinates   1842671..1843300 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate Escherichia coli str. 3426     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1837671..1848300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EC3426_RS08855 (EC3426_01786) ycbZ 1838072..1839832 (-) 1761 WP_000152888.1 Lon protease family protein -
  EC3426_RS08860 (EC3426_01787) matP 1840018..1840470 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  EC3426_RS08865 (EC3426_01788) ompA 1840546..1841586 (-) 1041 WP_000750416.1 porin OmpA -
  EC3426_RS08870 (EC3426_01789) sulA 1841943..1842452 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  EC3426_RS08875 (EC3426_01790) sxy/tfoX 1842671..1843300 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EC3426_RS08880 (EC3426_01791) yccS 1843263..1845425 (-) 2163 WP_000875058.1 YccS family putative transporter -
  EC3426_RS08885 (EC3426_01792) yccF 1845435..1845881 (-) 447 WP_001261235.1 YccF domain-containing protein -
  EC3426_RS08890 (EC3426_01793) helD 1846004..1848058 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1143258 EC3426_RS08875 WP_000839153.1 1842671..1843300(+) (sxy/tfoX) [Escherichia coli isolate Escherichia coli str. 3426]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1143258 EC3426_RS08875 WP_000839153.1 1842671..1843300(+) (sxy/tfoX) [Escherichia coli isolate Escherichia coli str. 3426]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment