Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ECTO73_RS14195 Genome accession   NZ_LS992171
Coordinates   2884309..2884938 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate Escherichia coli str. TO73     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2879309..2889938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECTO73_RS14180 (ECTO73_02882) helD 2879551..2881605 (-) 2055 WP_001295354.1 DNA helicase IV -
  ECTO73_RS14185 (ECTO73_02883) yccF 2881728..2882174 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ECTO73_RS14190 (ECTO73_02884) yccS 2882184..2884346 (+) 2163 WP_000875058.1 YccS family putative transporter -
  ECTO73_RS14195 (ECTO73_02885) sxy/tfoX 2884309..2884938 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ECTO73_RS14200 (ECTO73_02886) sulA 2885157..2885666 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ECTO73_RS14205 (ECTO73_02887) ompA 2886023..2887063 (+) 1041 WP_000750416.1 porin OmpA -
  ECTO73_RS14210 (ECTO73_02888) matP 2887139..2887591 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ECTO73_RS14215 (ECTO73_02889) ycbZ 2887777..2889537 (+) 1761 WP_000152888.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1143172 ECTO73_RS14195 WP_000839153.1 2884309..2884938(-) (sxy/tfoX) [Escherichia coli isolate Escherichia coli str. TO73]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1143172 ECTO73_RS14195 WP_000839153.1 2884309..2884938(-) (sxy/tfoX) [Escherichia coli isolate Escherichia coli str. TO73]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment