Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ECTO6_RS14990 Genome accession   NZ_LS992166
Coordinates   3031205..3031834 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate Escherichia coli str. TO6     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3026205..3036834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECTO6_RS14975 (ECTO6_03036) helD 3026447..3028501 (-) 2055 WP_001295354.1 DNA helicase IV -
  ECTO6_RS14980 (ECTO6_03037) yccF 3028624..3029070 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ECTO6_RS14985 (ECTO6_03038) yccS 3029080..3031242 (+) 2163 WP_000875061.1 YccS family putative transporter -
  ECTO6_RS14990 (ECTO6_03039) sxy/tfoX 3031205..3031834 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ECTO6_RS14995 (ECTO6_03040) sulA 3032053..3032562 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ECTO6_RS15000 (ECTO6_03041) ompA 3032919..3033959 (+) 1041 WP_000750416.1 porin OmpA -
  ECTO6_RS15005 (ECTO6_03042) matP 3034035..3034487 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ECTO6_RS15010 (ECTO6_03043) ycbZ 3034673..3036433 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1143127 ECTO6_RS14990 WP_000839153.1 3031205..3031834(-) (sxy/tfoX) [Escherichia coli isolate Escherichia coli str. TO6]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1143127 ECTO6_RS14990 WP_000839153.1 3031205..3031834(-) (sxy/tfoX) [Escherichia coli isolate Escherichia coli str. TO6]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment