Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   DYY97_RS01365 Genome accession   NZ_LS991421
Coordinates   277966..279765 (-) Length   599 a.a.
NCBI ID   WP_070650070.1    Uniprot ID   -
Organism   Lacticaseibacillus zeae isolate CECT 9104     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 272966..284765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYY97_RS01340 - 274231..274575 (+) 345 WP_010489774.1 hypothetical protein -
  DYY97_RS01345 - 274649..275368 (+) 720 WP_039639686.1 metal ABC transporter ATP-binding protein -
  DYY97_RS01350 - 275365..276162 (+) 798 WP_010489770.1 metal ABC transporter permease -
  DYY97_RS01355 - 276243..277091 (-) 849 WP_093997946.1 metallophosphoesterase family protein -
  DYY97_RS01360 - 277088..277969 (-) 882 WP_010489767.1 NAD(P)-dependent oxidoreductase -
  DYY97_RS01365 pepF 277966..279765 (-) 1800 WP_070650070.1 oligoendopeptidase F Regulator
  DYY97_RS01370 - 279894..280988 (+) 1095 WP_070650069.1 LCP family protein -
  DYY97_RS01375 brnQ 281154..282533 (-) 1380 WP_010489762.1 branched-chain amino acid transport system II carrier protein -
  DYY97_RS01380 - 283167..283850 (-) 684 WP_047106501.1 hydrolase -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 67326.34 Da        Isoelectric Point: 5.4341

>NTDB_id=1143066 DYY97_RS01365 WP_070650070.1 277966..279765(-) (pepF) [Lacticaseibacillus zeae isolate CECT 9104]
MQHLPVREDVPTKLTWDLTTIYPNDAAWNADFEAVREQAKEAAALKGTLGNSADALITGIKAVLAVFRRFEKVYVYSSLK
SDQDTGNATYQAMNAKAESLGAELASQLAFLDPEILAIPADKLTAWRDTESLKPFGHFIDAITVNRQHVLTTAAEALIAS
AGDALNASHATFNVLDNSDLQFGFVENEDGETVQLSNGLYGQLIRSTQRKLRKEAFETLLRAYESMKNTFAQTLSGQVKA
HNFNAKAHHYANARAAAMASNHIPESVYTTLIDQVNTHLPLLHRYVTLRKKVLGVDQLHMYDIYTPLTGKPPLTFTLDQA
KTEALKALAPLGDDYLSHVREIFDNRYIDVVENKGKRSGAYSGGSYDTNPFILLNWHDAVDELYTLIHETGHSVHSWYTR
HNQPYVYGDYPIFVAEIASTTNENLLTDYFLTHTDDPKVRAYILNYYLDGFKGTVFRQTQFAEFEHWIHQQDQQGEPLTA
TSMSTYYADLNARYYGLDVARDPEIAFEWARIPHFYYNYYVYQYATGFAAASTLAAGISSGEPNAASRYLDYLKSGSSQY
AIDTMKTAGVDMTKPDYLEAAFSMFEKRLTELEELLQKG

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=1143066 DYY97_RS01365 WP_070650070.1 277966..279765(-) (pepF) [Lacticaseibacillus zeae isolate CECT 9104]
ATGCAACATTTACCGGTACGTGAAGATGTTCCAACCAAGCTGACCTGGGATCTAACCACCATCTATCCAAATGATGCGGC
TTGGAACGCTGACTTTGAAGCTGTGCGCGAACAGGCTAAAGAAGCAGCCGCGCTCAAGGGAACTTTAGGCAATTCAGCCG
ATGCACTCATCACCGGCATCAAGGCGGTTTTAGCAGTCTTTCGACGATTTGAGAAAGTCTATGTTTATTCAAGCCTGAAA
AGCGATCAGGATACTGGCAACGCCACTTATCAGGCGATGAATGCCAAGGCCGAGAGCCTCGGTGCCGAACTTGCCAGTCA
GTTAGCCTTTTTGGATCCGGAGATTCTGGCAATTCCCGCAGACAAACTGACAGCATGGCGCGACACCGAAAGCCTCAAGC
CGTTTGGGCACTTTATTGATGCGATCACCGTTAATCGCCAACATGTGCTGACAACCGCAGCCGAGGCTCTGATTGCCAGT
GCCGGTGATGCGCTGAACGCCAGCCATGCTACTTTCAACGTCCTAGATAATTCCGACCTGCAATTCGGTTTCGTCGAAAA
TGAAGACGGCGAAACAGTGCAACTCAGTAACGGCTTGTATGGCCAGTTGATTCGCTCAACTCAGCGAAAATTGCGCAAAG
AAGCCTTTGAAACGTTACTGCGTGCTTACGAAAGCATGAAGAACACGTTTGCCCAAACGCTGAGCGGCCAAGTCAAGGCG
CACAACTTTAATGCCAAAGCCCATCATTACGCCAATGCCCGCGCGGCGGCAATGGCAAGTAATCATATTCCAGAAAGTGT
TTATACGACCCTCATCGACCAGGTCAACACCCATCTGCCGCTTCTGCATCGTTATGTCACATTGCGGAAAAAAGTCCTGG
GCGTCGATCAATTGCACATGTATGACATCTACACCCCGTTGACCGGCAAGCCGCCATTGACCTTCACGCTTGACCAAGCA
AAAACTGAAGCATTGAAAGCTTTGGCGCCGCTTGGTGATGATTATCTCAGCCATGTCCGGGAAATCTTTGACAACCGCTA
CATTGATGTCGTCGAAAATAAAGGCAAACGTTCCGGCGCTTATTCAGGTGGGTCTTACGATACGAATCCGTTTATTTTGC
TGAACTGGCATGACGCGGTGGACGAACTTTATACTTTGATTCACGAAACCGGCCACAGCGTTCACAGCTGGTACACGCGT
CACAACCAGCCTTATGTGTATGGCGATTACCCGATTTTTGTTGCCGAAATTGCGTCAACGACCAACGAAAATCTGCTCAC
CGATTACTTCCTGACCCACACGGATGACCCCAAGGTACGCGCCTACATCCTGAATTACTATCTCGATGGCTTTAAAGGTA
CCGTCTTCCGCCAGACGCAATTTGCCGAATTTGAACACTGGATTCATCAGCAGGACCAACAAGGCGAGCCACTCACGGCA
ACCAGTATGTCAACATACTACGCCGATCTCAATGCCCGGTATTATGGACTGGATGTTGCCCGCGATCCCGAAATTGCCTT
CGAATGGGCACGAATCCCGCATTTCTATTACAATTATTATGTCTATCAGTATGCAACCGGTTTTGCCGCAGCATCAACGC
TAGCTGCCGGCATTAGCAGCGGCGAACCCAACGCCGCGTCCCGCTACTTGGACTATTTAAAGTCAGGCAGCTCGCAATAT
GCCATCGATACCATGAAAACCGCTGGCGTCGATATGACCAAACCGGACTATCTGGAAGCGGCATTTTCAATGTTTGAAAA
ACGGTTAACGGAATTGGAAGAACTTTTGCAGAAAGGATGA

Domains

Predicted by InterProScan.

Peptidase family M3 (Peptidase_M3)

(203-582)

Oligopeptidase F (Peptidase_M3_N)

(114-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.862

99.165

0.524

Multiple sequence alignment