Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   STN4L_RS09365 Genome accession   NZ_LS974444
Coordinates   1758190..1758921 (+) Length   243 a.a.
NCBI ID   WP_002951673.1    Uniprot ID   A0AAP2RM94
Organism   Streptococcus thermophilus strain N4L     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1753190..1763921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STN4L_RS09340 (STN4L_02202) - 1753303..1755402 (+) 2100 WP_011681535.1 ATP-dependent Clp protease ATP-binding subunit -
  STN4L_RS10765 (STN4L_02203) - 1755832..1755957 (+) 126 WP_011681534.1 hypothetical protein -
  STN4L_RS09345 (STN4L_02204) - 1755976..1756611 (+) 636 WP_011681533.1 DUF4230 domain-containing protein -
  STN4L_RS09350 (STN4L_02205) - 1756681..1757358 (+) 678 WP_011681532.1 hypothetical protein -
  STN4L_RS09355 (STN4L_02206) - 1757410..1757709 (-) 300 WP_014621895.1 hypothetical protein -
  STN4L_RS09360 (STN4L_02207) - 1757706..1758125 (-) 420 WP_011681530.1 HIT family protein -
  STN4L_RS09365 (STN4L_02208) pptA 1758190..1758921 (+) 732 WP_002951673.1 ABC transporter ATP-binding protein Regulator
  STN4L_RS09370 (STN4L_02209) pptB 1758921..1759955 (+) 1035 WP_373867191.1 ABC transporter permease Regulator
  STN4L_RS09375 (STN4L_02210) ccrZ 1760013..1760804 (+) 792 WP_002951667.1 cell cycle regulator CcrZ -
  STN4L_RS09380 (STN4L_02211) trmB 1760814..1761455 (+) 642 WP_002947526.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  STN4L_RS09390 (STN4L_02213) - 1761691..1762872 (-) 1182 WP_002951656.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26830.05 Da        Isoelectric Point: 4.4606

>NTDB_id=1143061 STN4L_RS09365 WP_002951673.1 1758190..1758921(+) (pptA) [Streptococcus thermophilus strain N4L]
MLKLEKVTGGYANIPVLKDVTFEVADGELVGLIGLNGAGKSTTINEIIGLLTPYGGQIAIDGLTIQQDPASYRQKIGYIP
ETPSLYEELTLREHLETVLMAYGLDVTEGMARADKYLKLFRLDEKLDWFPTQFSKGMKQKVMIICAFIVNPSLFIVDEPF
LGLDPLAISDLIELLAEEKANGKSILMSTHVLDSAEKMCDRFVILHHGQILAQGTIDELRQTFGDSSASLNDIYMQLTKG
ELS

Nucleotide


Download         Length: 732 bp        

>NTDB_id=1143061 STN4L_RS09365 WP_002951673.1 1758190..1758921(+) (pptA) [Streptococcus thermophilus strain N4L]
ATGCTTAAATTAGAAAAGGTGACGGGTGGTTACGCTAATATTCCCGTCCTAAAAGATGTGACTTTTGAGGTGGCTGATGG
TGAATTGGTTGGTCTCATTGGTCTTAATGGTGCTGGAAAATCAACAACAATTAACGAGATTATTGGTCTCTTAACACCCT
ATGGAGGACAGATTGCCATTGATGGGTTAACTATTCAACAAGATCCAGCTAGCTATCGTCAGAAGATTGGCTATATTCCT
GAAACGCCAAGTCTTTATGAAGAATTGACGCTTCGTGAACATTTGGAAACGGTGTTGATGGCCTATGGTCTTGATGTGAC
TGAGGGTATGGCACGTGCGGACAAGTACCTCAAACTCTTTCGCTTAGATGAAAAGTTGGACTGGTTCCCAACTCAGTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCCTTTATTGTGAATCCAAGTCTTTTCATTGTTGATGAGCCCTTT
TTGGGATTGGATCCCTTGGCGATTTCTGATTTGATTGAGCTTCTGGCTGAGGAAAAAGCCAATGGCAAGTCTATTCTCAT
GTCGACTCACGTTTTGGATTCAGCTGAGAAGATGTGTGATCGCTTTGTGATTTTGCACCATGGACAGATCTTGGCACAGG
GGACGATTGATGAGCTTCGTCAGACCTTTGGTGACAGTAGTGCTAGTCTTAACGATATCTATATGCAGTTGACTAAGGGA
GAATTGTCATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

100

100

1
  pptA Streptococcus salivarius strain HSISS4

97.119

100

0.971

Multiple sequence alignment