Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   STN4L_RS07285 Genome accession   NZ_LS974444
Coordinates   1383252..1384019 (-) Length   255 a.a.
NCBI ID   WP_113870460.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain N4L     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1378252..1389019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STN4L_RS07265 (STN4L_01701) - 1378698..1378889 (-) 192 WP_002886272.1 DUF951 domain-containing protein -
  STN4L_RS07270 - 1379034..1380282 (+) 1249 Protein_1349 ISL3 family transposase -
  STN4L_RS07275 (STN4L_01706) dnaN 1380358..1381494 (-) 1137 WP_011680575.1 DNA polymerase III subunit beta -
  STN4L_RS07280 (STN4L_01707) dnaA 1381649..1383013 (-) 1365 WP_002948584.1 chromosomal replication initiator protein DnaA -
  STN4L_RS07285 (STN4L_01708) spo0J 1383252..1384019 (-) 768 WP_113870460.1 ParB/RepB/Spo0J family partition protein Regulator
  STN4L_RS07290 - 1384085..1385322 (-) 1238 Protein_1353 S1C family serine protease -
  STN4L_RS07295 (STN4L_01711) rlmH 1385527..1386006 (+) 480 WP_011681766.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  STN4L_RS07300 (STN4L_01712) - 1386022..1386705 (+) 684 WP_011226711.1 YoaK family protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29433.78 Da        Isoelectric Point: 9.4740

>NTDB_id=1143047 STN4L_RS07285 WP_113870460.1 1383252..1384019(-) (spo0J) [Streptococcus thermophilus strain N4L]
MSEQLKTLSISEIYPNPFQPRLKFSDEELVELSQSISENGLIQPIVVRKSDIIGYELIAGERRLRACKRLGMTEIPAVVK
EVTDQESRKQAIIENLQRSNLNPIEEAKAYRNLIDELTYSHEELAKAMGKSRPYISNVLRLLQLPREIQTSIENGSLSQG
HARALLAIEDSQKQLTIFQQVVAERWSVRTLEKKLQELPRKQKSKKDTHVKDKEKELERSLGLPITLRYHKNHSGTIQIH
FSTEEDFNRIINKLI

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1143047 STN4L_RS07285 WP_113870460.1 1383252..1384019(-) (spo0J) [Streptococcus thermophilus strain N4L]
ATGTCAGAACAACTCAAAACTTTATCTATTAGTGAAATTTACCCCAATCCTTTTCAACCTCGTCTAAAATTCTCCGATGA
AGAGTTAGTAGAACTAAGTCAATCAATATCAGAAAATGGTTTAATACAGCCAATTGTTGTACGAAAATCTGACATTATTG
GTTATGAACTAATTGCTGGAGAAAGACGTTTACGAGCCTGTAAACGTTTAGGGATGACAGAAATCCCTGCAGTTGTAAAG
GAAGTTACAGATCAAGAGAGTCGTAAACAAGCTATTATTGAAAATCTACAACGATCAAATCTCAATCCTATTGAAGAAGC
AAAGGCCTATCGTAATTTAATTGATGAGTTAACTTATAGTCACGAGGAGCTCGCTAAAGCTATGGGAAAATCTAGACCAT
ATATTAGTAACGTTCTTAGACTACTACAACTTCCGCGAGAGATACAAACGAGTATTGAAAACGGAAGTCTGAGTCAGGGA
CATGCTAGAGCACTCTTAGCTATTGAGGATTCTCAAAAGCAGTTAACCATCTTTCAGCAGGTTGTGGCTGAAAGATGGTC
TGTTCGTACTCTAGAAAAAAAACTTCAGGAACTTCCTAGAAAACAAAAATCTAAAAAAGATACCCATGTAAAAGATAAAG
AAAAAGAACTTGAAAGATCACTAGGTCTCCCTATAACTCTACGTTATCACAAAAATCACTCAGGAACGATTCAAATACAC
TTTTCGACAGAAGAAGATTTTAACAGAATTATCAACAAGCTTATCTAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(8-95)

HTH domain found in ParB protein (HTH_ParB)

(147-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

56.471

100

0.565

Multiple sequence alignment