Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   STN4L_RS05020 Genome accession   NZ_LS974444
Coordinates   968431..968874 (-) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain N4L     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 963431..973874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STN4L_RS05005 (STN4L_01167) - 964432..964689 (-) 258 WP_224107491.1 hypothetical protein -
  STN4L_RS05010 (STN4L_01168) rcrQ 964845..966623 (-) 1779 WP_024704205.1 ABC transporter ATP-binding protein Regulator
  STN4L_RS05015 (STN4L_01169) rcrP 966613..968427 (-) 1815 WP_014608025.1 ABC transporter ATP-binding protein Regulator
  STN4L_RS05020 (STN4L_01170) rcrR 968431..968874 (-) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  STN4L_RS05025 (STN4L_01171) - 969065..969475 (-) 411 WP_011680804.1 peptide deformylase -
  STN4L_RS05030 (STN4L_01172) gdhA 969734..971086 (-) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  STN4L_RS05035 (STN4L_01175) - 971430..972535 (+) 1106 Protein_969 AAA family ATPase -
  STN4L_RS05040 (STN4L_01176) - 972599..973351 (+) 753 WP_014727345.1 NUDIX domain-containing protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=1143031 STN4L_RS05020 WP_002945408.1 968431..968874(-) (rcrR) [Streptococcus thermophilus strain N4L]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=1143031 STN4L_RS05020 WP_002945408.1 968431..968874(-) (rcrR) [Streptococcus thermophilus strain N4L]
ATGCATGGTAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGTGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537

Multiple sequence alignment