Detailed information    

insolico Bioinformatically predicted

Overview

Name   cipB   Type   Regulator
Locus tag   DQL00_RS11225 Genome accession   NZ_LS483523
Coordinates   2109771..2109920 (-) Length   49 a.a.
NCBI ID   WP_001820573.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 4041STDY6836169     
Function   indirect induction of ComX; activation of comRS system (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 2110787..2111591 2109771..2109920 flank 867


Gene organization within MGE regions


Location: 2109771..2111591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL00_RS11225 cipB 2109771..2109920 (-) 150 WP_001820573.1 bacteriocin-like peptide BlpO Regulator
  DQL00_RS11235 blpN 2110164..2110367 (-) 204 WP_001099492.1 two-peptide bacteriocin subunit BlpN -
  DQL00_RS11240 blpM 2110383..2110637 (-) 255 WP_000379877.1 two-peptide bacteriocin subunit BlpM -

Sequence

Protein


Download         Length: 49 a.a.        Molecular weight: 5150.91 Da        Isoelectric Point: 3.9133

>NTDB_id=1142991 DQL00_RS11225 WP_001820573.1 2109771..2109920(-) (cipB) [Streptococcus pneumoniae strain 4041STDY6836169]
MDTKMMSQFSVMDNEMLACVEGGDIDWGRKISCAAGVAYGAIDGCATTV

Nucleotide


Download         Length: 150 bp        

>NTDB_id=1142991 DQL00_RS11225 WP_001820573.1 2109771..2109920(-) (cipB) [Streptococcus pneumoniae strain 4041STDY6836169]
ATGGATACAAAAATGATGTCACAATTTTCTGTTATGGATAATGAAATGCTTGCTTGCGTTGAAGGTGGAGATATTGATTG
GGGAAGAAAAATTAGTTGTGCAGCAGGGGTTGCATATGGCGCAATTGATGGGTGTGCAACAACGGTTTGA

Domains

Predicted by InterproScan.

Bacteriocin class II with double-glycine leader peptide (Bacteriocin_IIc)

(6-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cipB Streptococcus mutans UA159

51.02

100

0.51

Multiple sequence alignment